Analysis of interatomic Contacts of Structural Units in PDB entry:
3H1J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3H1J entry

There are 20 chains in PDB entry 3H1J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ILE 444
B	PRO 19	LEU 439
C	MET 1	TYR 380
D	GLY 1	LYS 241
E	VAL 1	GLY 196
F	GLY 10	LYS 110
G	GLY 1	GLN 81
H	GLU 9	LYS 78
I	UNK 28	ARG 77
J	ALA 4	GLU 64
N	THR 3	ILE 444
O	CYS 18	LEU 439
P	ALA 2	TYR 380
Q	GLY 1	LYS 241
R	VAL 1	GLY 196
S	GLY 10	LYS 110
T	GLY 1	ASN 79
U	GLU 12	LYS 78
V	UNK 28	ARG 77
W	ALA 4	SER 62

There are196 helices in PDB entry 3H1J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	3	11	Right-handed alpha
Helix 2	2	A	54	61	Right-handed alpha
Helix 3	3	A	71	81	Right-handed alpha
Helix 4	4	A	105	119	Right-handed alpha
Helix 5	5	A	123	142	Right-handed alpha
Helix 6	6	A	144	158	Right-handed alpha
Helix 7	7	A	161	165	Right-handed 310
Helix 8	8	A	170	177	Right-handed alpha
Helix 9	9	A	178	190	Right-handed alpha
Helix 10	10	A	191	194	Right-handed 310
Helix 11	11	A	204	216	Right-handed alpha
Helix 12	12	A	222	227	Right-handed alpha
Helix 13	13	A	265	278	Right-handed alpha
Helix 14	14	A	286	290	Right-handed 310
Helix 15	15	A	292	302	Right-handed alpha
Helix 16	16	A	327	329	Right-handed 310
Helix 17	17	A	330	349	Right-handed alpha
Helix 18	18	A	350	368	Right-handed alpha
Helix 19	19	A	371	387	Right-handed alpha
Helix 20	20	A	391	402	Right-handed alpha
Helix 21	21	A	403	415	Right-handed alpha
Helix 22	22	A	433	439	Right-handed alpha
Helix 23	23	A	440	442	Right-handed 310
Helix 24	24	B	54	58	Right-handed 310
Helix 25	25	B	59	63	Right-handed 310
Helix 26	26	B	64	71	Right-handed alpha
Helix 27	27	B	81	92	Right-handed alpha
Helix 28	28	B	115	129	Right-handed alpha
Helix 29	29	B	133	141	Right-handed alpha
Helix 30	30	B	141	152	Right-handed alpha
Helix 31	31	B	154	168	Right-handed alpha
Helix 32	32	B	170	174	Right-handed 310
Helix 33	33	B	179	183	Right-handed 310
Helix 34	34	B	187	199	Right-handed alpha
Helix 35	35	B	212	224	Right-handed alpha
Helix 36	36	B	266	280	Right-handed alpha
Helix 37	37	B	293	301	Right-handed alpha
Helix 38	38	B	332	349	Right-handed alpha
Helix 39	39	B	353	372	Right-handed alpha
Helix 40	40	B	374	389	Right-handed alpha
Helix 41	41	B	394	404	Right-handed alpha
Helix 42	42	B	406	420	Right-handed alpha
Helix 43	43	B	429	433	Right-handed 310
Helix 44	44	B	435	439	Right-handed 310
Helix 45	45	C	4	9	Right-handed alpha
Helix 46	46	C	11	20	Right-handed alpha
Helix 47	47	C	29	32	Right-handed 310
Helix 48	48	C	33	54	Right-handed alpha
Helix 49	49	C	62	73	Right-handed alpha
Helix 50	50	C	76	105	Right-handed alpha
Helix 51	51	C	106	109	Right-handed 310
Helix 52	52	C	110	133	Right-handed alpha
Helix 53	53	C	137	150	Right-handed alpha
Helix 54	54	C	151	154	Right-handed 310
Helix 55	55	C	156	167	Right-handed alpha
Helix 56	56	C	172	205	Right-handed alpha
Helix 57	57	C	221	247	Right-handed alpha
Helix 58	58	C	253	258	Right-handed 310
Helix 59	59	C	272	274	Right-handed 310
Helix 60	60	C	275	285	Right-handed alpha
Helix 61	61	C	287	301	Right-handed alpha
Helix 62	62	C	302	309	Right-handed 310
Helix 63	63	C	319	342	Right-handed alpha
Helix 64	64	C	347	365	Right-handed alpha
Helix 65	65	C	365	378	Right-handed alpha
Helix 66	66	D	22	36	Right-handed alpha
Helix 67	67	D	37	40	Right-handed 310
Helix 68	68	D	47	52	Right-handed alpha
Helix 69	69	D	57	67	Right-handed alpha
Helix 70	70	D	97	104	Right-handed alpha
Helix 71	71	D	115	119	Right-handed 310
Helix 72	72	D	122	133	Right-handed alpha
Helix 73	73	D	178	195	Right-handed alpha
Helix 74	74	D	197	232	Right-handed alpha
Helix 75	75	E	1	5	Right-handed 310
Helix 76	76	E	15	19	Right-handed 310
Helix 77	77	E	25	61	Right-handed alpha
Helix 78	78	E	102	109	Right-handed alpha
Helix 79	79	E	122	127	Right-handed alpha
Helix 80	80	F	11	25	Right-handed alpha
Helix 81	81	F	26	30	Right-handed 310
Helix 82	82	F	32	37	Right-handed 310
Helix 83	83	F	40	50	Right-handed alpha
Helix 84	84	F	51	72	Right-handed alpha
Helix 85	85	F	76	80	Right-handed 310
Helix 86	86	F	82	86	Right-handed 310
Helix 87	87	F	90	110	Right-handed alpha
Helix 88	88	G	32	69	Right-handed alpha
Helix 89	89	G	73	77	Right-handed 310
Helix 90	90	H	15	26	Right-handed alpha
Helix 91	91	H	27	47	Right-handed alpha
Helix 92	92	H	54	70	Right-handed alpha
Helix 93	93	H	72	77	Right-handed alpha
Helix 94	94	I	51	56	Right-handed alpha
Helix 95	95	J	4	13	Right-handed alpha
Helix 96	96	J	16	47	Right-handed alpha
Helix 97	97	J	51	56	Right-handed alpha
Helix 98	98	J	57	59	Right-handed 310
Helix 99	99	N	3	11	Right-handed alpha
Helix 100	100	N	54	61	Right-handed alpha
Helix 101	101	N	71	81	Right-handed alpha
Helix 102	102	N	105	119	Right-handed alpha
Helix 103	103	N	123	142	Right-handed alpha
Helix 104	104	N	144	158	Right-handed alpha
Helix 105	105	N	161	165	Right-handed 310
Helix 106	106	N	170	177	Right-handed alpha
Helix 107	107	N	178	190	Right-handed alpha
Helix 108	108	N	191	194	Right-handed 310
Helix 109	109	N	204	216	Right-handed alpha
Helix 110	110	N	222	227	Right-handed 310
Helix 111	111	N	265	278	Right-handed alpha
Helix 112	112	N	286	290	Right-handed 310
Helix 113	113	N	292	302	Right-handed alpha
Helix 114	114	N	327	329	Right-handed 310
Helix 115	115	N	330	349	Right-handed alpha
Helix 116	116	N	350	368	Right-handed alpha
Helix 117	117	N	371	387	Right-handed alpha
Helix 118	118	N	391	402	Right-handed alpha
Helix 119	119	N	403	415	Right-handed alpha
Helix 120	120	N	433	439	Right-handed alpha
Helix 121	121	N	440	442	Right-handed 310
Helix 122	122	O	54	58	Right-handed 310
Helix 123	123	O	59	63	Right-handed 310
Helix 124	124	O	64	71	Right-handed alpha
Helix 125	125	O	81	92	Right-handed alpha
Helix 126	126	O	115	129	Right-handed alpha
Helix 127	127	O	133	141	Right-handed alpha
Helix 128	128	O	141	152	Right-handed alpha
Helix 129	129	O	154	168	Right-handed alpha
Helix 130	130	O	170	174	Right-handed 310
Helix 131	131	O	179	183	Right-handed 310
Helix 132	132	O	187	199	Right-handed alpha
Helix 133	133	O	200	202	Right-handed 310
Helix 134	134	O	212	224	Right-handed alpha
Helix 135	135	O	266	280	Right-handed alpha
Helix 136	136	O	293	301	Right-handed alpha
Helix 137	137	O	332	349	Right-handed alpha
Helix 138	138	O	353	372	Right-handed alpha
Helix 139	139	O	374	389	Right-handed alpha
Helix 140	140	O	394	404	Right-handed alpha
Helix 141	141	O	406	420	Right-handed alpha
Helix 142	142	O	429	433	Right-handed 310
Helix 143	143	P	4	9	Right-handed alpha
Helix 144	144	P	11	20	Right-handed alpha
Helix 145	145	P	29	32	Right-handed 310
Helix 146	146	P	33	54	Right-handed alpha
Helix 147	147	P	62	73	Right-handed alpha
Helix 148	148	P	76	105	Right-handed alpha
Helix 149	149	P	106	109	Right-handed 310
Helix 150	150	P	110	134	Right-handed alpha
Helix 151	151	P	137	150	Right-handed alpha
Helix 152	152	P	151	154	Right-handed 310
Helix 153	153	P	158	167	Right-handed alpha
Helix 154	154	P	172	205	Right-handed alpha
Helix 155	155	P	221	247	Right-handed alpha
Helix 156	156	P	253	258	Right-handed 310
Helix 157	157	P	272	274	Right-handed 310
Helix 158	158	P	275	285	Right-handed alpha
Helix 159	159	P	287	301	Right-handed alpha
Helix 160	160	P	302	309	Right-handed 310
Helix 161	161	P	319	341	Right-handed alpha
Helix 162	162	P	347	365	Right-handed alpha
Helix 163	163	P	365	378	Right-handed alpha
Helix 164	164	Q	22	36	Right-handed alpha
Helix 165	165	Q	37	40	Right-handed 310
Helix 166	166	Q	47	52	Right-handed alpha
Helix 167	167	Q	57	67	Right-handed alpha
Helix 168	168	Q	97	104	Right-handed alpha
Helix 169	169	Q	115	120	Right-handed alpha
Helix 170	170	Q	122	133	Right-handed alpha
Helix 171	171	Q	178	195	Right-handed alpha
Helix 172	172	Q	197	232	Right-handed alpha
Helix 173	173	R	1	5	Right-handed 310
Helix 174	174	R	15	19	Right-handed 310
Helix 175	175	R	25	61	Right-handed alpha
Helix 176	176	R	102	109	Right-handed alpha
Helix 177	177	R	122	127	Right-handed alpha
Helix 178	178	S	10	25	Right-handed alpha
Helix 179	179	S	26	30	Right-handed 310
Helix 180	180	S	32	37	Right-handed 310
Helix 181	181	S	40	50	Right-handed alpha
Helix 182	182	S	51	72	Right-handed alpha
Helix 183	183	S	76	80	Right-handed 310
Helix 184	184	S	82	86	Right-handed 310
Helix 185	185	S	90	110	Right-handed alpha
Helix 186	186	T	32	69	Right-handed alpha
Helix 187	187	T	73	77	Right-handed 310
Helix 188	188	U	15	27	Right-handed alpha
Helix 189	189	U	27	47	Right-handed alpha
Helix 190	190	U	54	70	Right-handed alpha
Helix 191	191	U	72	77	Right-handed alpha
Helix 192	192	V	51	55	Right-handed 310
Helix 193	193	W	4	13	Right-handed alpha
Helix 194	194	W	16	47	Right-handed alpha
Helix 195	195	W	51	56	Right-handed alpha
Helix 196	196	W	57	59	Right-handed 310

There are 22 sheets in PDB entry 3H1J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	18	first strand
Strand 2	A	24	29	anti-parallel
Strand 3	A	196	201	parallel
Strand 4	A	34	41	anti-parallel
Strand 5	A	95	102	anti-parallel
Strand 6	A	85	90	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	281	first strand
Strand 2	A	306	313	anti-parallel
Strand 3	A	318	326	anti-parallel
Strand 4	A	251	258	anti-parallel
Strand 5	A	421	426	anti-parallel
Strand 6	A	239	245	parallel
Strand 7	G	11	18	anti-parallel
Strand 8	D	234	237	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	34	36	anti-parallel
Strand 3	B	204	207	parallel
Strand 4	B	48	51	anti-parallel
Strand 5	B	104	112	anti-parallel
Strand 6	B	44	45	anti-parallel

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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	34	36	anti-parallel
Strand 3	B	204	207	parallel
Strand 4	B	48	51	anti-parallel
Strand 5	B	104	112	anti-parallel
Strand 6	B	95	101	anti-parallel
Strand 7	I	66	69	anti-parallel
Strand 8	I	75	76	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	247	first strand
Strand 2	B	422	428	parallel
Strand 3	B	252	260	anti-parallel
Strand 4	B	319	329	anti-parallel
Strand 5	B	307	316	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	25	first strand
Strand 2	C	218	220	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	72	first strand
Strand 2	D	81	83	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	149	first strand
Strand 2	D	157	158	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	76	first strand
Strand 2	E	193	195	anti-parallel
Strand 3	E	185	186	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	88	first strand
Strand 2	E	97	100	anti-parallel
Strand 3	E	132	135	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	148	first strand
Strand 2	E	156	158	anti-parallel
Strand 3	E	163	165	anti-parallel
Strand 4	E	171	173	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	15	18	first strand
Strand 2	N	24	29	anti-parallel
Strand 3	N	196	201	parallel
Strand 4	N	34	41	anti-parallel
Strand 5	N	95	102	anti-parallel
Strand 6	N	85	90	anti-parallel

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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	279	281	first strand
Strand 2	N	306	313	anti-parallel
Strand 3	N	318	326	anti-parallel
Strand 4	N	251	258	anti-parallel
Strand 5	N	421	426	anti-parallel
Strand 6	N	239	245	parallel
Strand 7	T	11	18	anti-parallel
Strand 8	Q	234	237	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	26	28	first strand
Strand 2	O	34	36	anti-parallel
Strand 3	O	204	207	parallel
Strand 4	O	48	51	anti-parallel
Strand 5	O	104	112	anti-parallel
Strand 6	O	44	45	anti-parallel

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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	26	28	first strand
Strand 2	O	34	36	anti-parallel
Strand 3	O	204	207	parallel
Strand 4	O	48	51	anti-parallel
Strand 5	O	104	112	anti-parallel
Strand 6	O	95	101	anti-parallel
Strand 7	V	65	69	anti-parallel
Strand 8	V	75	77	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	243	247	first strand
Strand 2	O	422	428	parallel
Strand 3	O	252	260	anti-parallel
Strand 4	O	319	329	anti-parallel
Strand 5	O	307	316	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	23	25	first strand
Strand 2	P	218	220	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	70	72	first strand
Strand 2	Q	81	83	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	148	149	first strand
Strand 2	Q	157	158	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	74	76	first strand
Strand 2	R	193	195	anti-parallel
Strand 3	R	185	186	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	85	88	first strand
Strand 2	R	97	100	anti-parallel
Strand 3	R	132	135	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	147	148	first strand
Strand 2	R	154	158	anti-parallel
Strand 3	R	163	166	anti-parallel
Strand 4	R	171	173	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3H1J

Analysis of interatomic Contacts of Structural Units in PDB entry:
3H1J