Analysis of interatomic Contacts of Structural Units in PDB entry:
3H8E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3H8E entry

There are 2 chains in PDB entry 3H8E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1ALA 497
B
MET 1ALA 497
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3H8E. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
9 13Right-handed 310
Helix 2
2
A
25 27Right-handed 310
Helix 3
3
A
29 39Right-handed alpha
Helix 4
4
A
41 49Right-handed alpha
Helix 5
5
A
85 103Right-handed alpha
Helix 6
6
A
123 137Right-handed alpha
Helix 7
7
A
165 192Right-handed alpha
Helix 8
8
A
198 213Right-handed alpha
Helix 9
9
A
222 229Right-handed alpha
Helix 10
10
A
231 239Right-handed alpha
Helix 11
11
A
291 308Right-handed alpha
Helix 12
12
A
351 364Right-handed alpha
Helix 13
13
A
365 367Right-handed 310
Helix 14
14
A
378 386Right-handed alpha
Helix 15
15
A
396 411Right-handed alpha
Helix 16
16
A
420 428Right-handed 310
Helix 17
17
A
442 453Right-handed alpha
Helix 18
18
A
483 496Right-handed alpha
Helix 19
19
B
9 13Right-handed 310
Helix 20
20
B
23 27Right-handed 310
Helix 21
21
B
29 39Right-handed alpha
Helix 22
22
B
41 49Right-handed alpha
Helix 23
23
B
85 103Right-handed alpha
Helix 24
24
B
123 138Right-handed alpha
Helix 25
25
B
162 164Right-handed 310
Helix 26
26
B
165 192Right-handed alpha
Helix 27
27
B
198 213Right-handed alpha
Helix 28
28
B
222 229Right-handed alpha
Helix 29
29
B
231 239Right-handed alpha
Helix 30
30
B
291 308Right-handed alpha
Helix 31
31
B
351 364Right-handed alpha
Helix 32
32
B
365 367Right-handed 310
Helix 33
33
B
378 386Right-handed alpha
Helix 34
34
B
396 411Right-handed alpha
Helix 35
35
B
420 428Right-handed 310
Helix 36
36
B
442 453Right-handed alpha
Helix 37
37
B
482 495Right-handed alpha
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There are 8 sheets in PDB entry 3H8E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2 6first strand
Strand 2
A
156 160parallel
Strand 3
A
107 110parallel
Strand 4
A
18 23parallel
Strand 5
A
73 79parallel
Strand 6
A
59 62anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
216 221first strand
Strand 2
A
246 253anti-parallel
Strand 3
A
312 319anti-parallel
Strand 4
A
262 268parallel
Strand 5
A
370 375parallel
Strand 6
A
460 464parallel
Strand 7
A
390 394anti-parallel
Strand 8
A
414 416parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
333 336first strand
Strand 2
A
342 345anti-parallel
Strand 3
A
434 435parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
470 471first strand
Strand 2
A
478 479anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2 6first strand
Strand 2
B
156 160parallel
Strand 3
B
107 110parallel
Strand 4
B
18 22parallel
Strand 5
B
73 77parallel
Strand 6
B
59 62anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
216 221first strand
Strand 2
B
246 253anti-parallel
Strand 3
B
312 319anti-parallel
Strand 4
B
262 268parallel
Strand 5
B
370 375parallel
Strand 6
B
460 464parallel
Strand 7
B
390 394anti-parallel
Strand 8
B
414 416parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
333 336first strand
Strand 2
B
342 345anti-parallel
Strand 3
B
434 435parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
470 471first strand
Strand 2
B
478 479anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il