Analysis of interatomic Contacts of Structural Units in PDB entry:
3HBW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HBW entry

There are 2 chains in PDB entry 3HBW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 64LEU 212
B
 PRO 1064LEU 1212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3HBW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
97 100Right-handed 310
Helix 2
2
A
138 140Right-handed 310
Helix 3
3
A
181 185Right-handed 310
Helix 4
4
A
189 192Right-handed 310
Helix 5
5
B
1097 1100Right-handed 310
Helix 6
6
B
1138 1140Right-handed 310
Helix 7
7
B
1181 1185Right-handed 310
Helix 8
8
B
1189 1192Right-handed 310
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There are 6 sheets in PDB entry 3HBW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
152 161anti-parallel
Strand 3
A
194 204anti-parallel
Strand 4
A
66 75anti-parallel
Strand 5
A
102 108anti-parallel
Strand 6
A
111 116anti-parallel
Strand 7
A
142 148anti-parallel
Strand 8
A
152 161anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 83first strand
Strand 2
A
89 92anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 125first strand
Strand 2
A
131 134anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1168 1170first strand
Strand 2
B
1152 1161anti-parallel
Strand 3
B
1194 1204anti-parallel
Strand 4
B
1066 1075anti-parallel
Strand 5
B
1102 1108anti-parallel
Strand 6
B
1111 1116anti-parallel
Strand 7
B
1142 1148anti-parallel
Strand 8
B
1152 1161anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1080 1083first strand
Strand 2
B
1089 1092anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1122 1125first strand
Strand 2
B
1131 1134anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il