Analysis of interatomic Contacts of Structural Units in PDB entry:
3HMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HMI entry

There is 1 chain in PDB entry 3HMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 279SER 546
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3HMI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
284 286Right-handed 310
Helix 2
2
A
295 298Right-handed 310
Helix 3
3
A
309 311Right-handed 310
Helix 4
4
A
325 338Right-handed alpha
Helix 5
5
A
368 376Right-handed alpha
Helix 6
6
A
382 403Right-handed alpha
Helix 7
7
A
411 413Right-handed 310
Helix 8
8
A
419 421Right-handed 310
Helix 9
9
A
448 452Right-handed 310
Helix 10
10
A
453 460Right-handed alpha
Helix 11
11
A
463 480Right-handed alpha
Helix 12
12
A
490 492Right-handed 310
Helix 13
13
A
493 500Right-handed alpha
Helix 14
14
A
511 522Right-handed alpha
Helix 15
15
A
525 529Right-handed 310
Helix 16
16
A
531 546Right-handed alpha
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There are 4 sheets in PDB entry 3HMI. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 293first strand
Strand 2
A
302 307anti-parallel
Strand 3
A
312 318anti-parallel
Strand 4
A
358 362anti-parallel
Strand 5
A
347 351anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 406first strand
Strand 2
A
431 432anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 417first strand
Strand 2
A
423 425anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 440first strand
Strand 2
A
461 462anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il