Analysis of interatomic Contacts of Structural Units in PDB entry:
3HNF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HNF entry

There are 2 chains in PDB entry 3HNF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 14ARG 742
B
 MET 1LEU 566
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 73 helices in PDB entry 3HNF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 23Right-handed alpha
Helix 2
2
A
24 27Right-handed 310
Helix 3
3
A
35 44Right-handed alpha
Helix 4
4
A
52 67Right-handed alpha
Helix 5
5
A
68 71Right-handed 310
Helix 6
6
A
72 88Right-handed alpha
Helix 7
7
A
93 104Right-handed alpha
Helix 8
8
A
117 126Right-handed alpha
Helix 9
9
A
127 133Right-handed alpha
Helix 10
10
A
134 135Right-handed 310
Helix 11
11
A
136 142Right-handed 310
Helix 12
12
A
144 155Right-handed alpha
Helix 13
13
A
166 180Right-handed alpha
Helix 14
14
A
182 195Right-handed alpha
Helix 15
15
A
201 208Right-handed alpha
Helix 16
16
A
227 244Right-handed alpha
Helix 17
17
A
271 286Right-handed alpha
Helix 18
18
A
307 312Right-handed alpha
Helix 19
19
A
335 344Right-handed alpha
Helix 20
20
A
363 376Right-handed alpha
Helix 21
21
A
386 401Right-handed alpha
Helix 22
22
A
408 414Right-handed alpha
Helix 23
23
A
417 421Right-handed 310
Helix 24
24
A
452 454Right-handed 310
Helix 25
25
A
462 484Right-handed alpha
Helix 26
26
A
488 499Right-handed alpha
Helix 27
27
A
507 516Right-handed alpha
Helix 28
28
A
521 551Right-handed alpha
Helix 29
29
A
566 571Right-handed alpha
Helix 30
30
A
580 592Right-handed alpha
Helix 31
31
A
604 611Right-handed alpha
Helix 32
32
A
638 648Right-handed alpha
Helix 33
33
A
652 662Right-handed alpha
Helix 34
34
A
673 680Right-handed alpha
Helix 35
35
A
682 686Right-handed 310
Helix 36
36
A
687 699Right-handed alpha
Helix 37
37
A
716 731Right-handed alpha
Helix 38
38
B
15 24Right-handed alpha
Helix 39
39
B
36 44Right-handed alpha
Helix 40
40
B
54 66Right-handed alpha
Helix 41
41
B
72 89Right-handed alpha
Helix 42
42
B
93 104Right-handed alpha
Helix 43
43
B
117 127Right-handed alpha
Helix 44
44
B
127 135Right-handed alpha
Helix 45
45
B
136 143Right-handed 310
Helix 46
46
B
144 155Right-handed alpha
Helix 47
47
B
166 180Right-handed alpha
Helix 48
48
B
182 195Right-handed alpha
Helix 49
49
B
201 208Right-handed alpha
Helix 50
50
B
227 244Right-handed alpha
Helix 51
51
B
262 266Right-handed 310
Helix 52
52
B
271 286Right-handed alpha
Helix 53
53
B
307 314Right-handed alpha
Helix 54
54
B
320 324Right-handed 310
Helix 55
55
B
335 344Right-handed alpha
Helix 56
56
B
363 377Right-handed alpha
Helix 57
57
B
386 400Right-handed alpha
Helix 58
58
B
407 414Right-handed alpha
Helix 59
59
B
417 421Right-handed 310
Helix 60
60
B
462 484Right-handed alpha
Helix 61
61
B
488 499Right-handed alpha
Helix 62
62
B
507 516Right-handed alpha
Helix 63
63
B
521 551Right-handed alpha
Helix 64
64
B
560 564Right-handed 310
Helix 65
65
B
566 570Right-handed 310
Helix 66
66
B
580 592Right-handed alpha
Helix 67
67
B
606 612Right-handed alpha
Helix 68
68
B
638 648Right-handed alpha
Helix 69
69
B
652 662Right-handed alpha
Helix 70
70
B
673 680Right-handed alpha
Helix 71
71
B
682 686Right-handed 310
Helix 72
72
B
687 700Right-handed alpha
Helix 73
73
B
716 730Right-handed alpha
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There are 13 sheets in PDB entry 3HNF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
446 450anti-parallel
Strand 3
A
502 506parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 222first strand
Strand 2
A
248 251parallel
Strand 3
A
297 301parallel
Strand 4
A
328 334parallel
Strand 5
A
404 407parallel
Strand 6
A
734 736anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
267 268anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 350first strand
Strand 2
A
382 385anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
624 625first strand
Strand 2
A
636 637anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
710 711first strand
Strand 2
A
739 740parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 4first strand
Strand 2
B
10 12anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
162 163anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 200first strand
Strand 2
B
446 450anti-parallel
Strand 3
B
502 506parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
442 444first strand
Strand 2
B
218 222anti-parallel
Strand 3
B
247 251parallel
Strand 4
B
297 301parallel
Strand 5
B
328 333parallel
Strand 6
B
404 406parallel
Strand 7
B
734 736anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 350first strand
Strand 2
B
382 385anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
624 627first strand
Strand 2
B
634 637anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
710 711first strand
Strand 2
B
739 740parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il