Analysis of interatomic Contacts of Structural Units in PDB entry:
3HOD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HOD entry

There are 2 chains in PDB entry 3HOD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 207LEU 476
B
 GLU 207LEU 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3HOD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
207 226Right-handed alpha
Helix 2
2
A
229 238Right-handed alpha
Helix 3
3
A
251 262Right-handed alpha
Helix 4
4
A
276 303Right-handed alpha
Helix 5
5
A
305 309Right-handed 310
Helix 6
6
A
310 331Right-handed alpha
Helix 7
7
A
342 344Right-handed 310
Helix 8
8
A
350 355Right-handed alpha
Helix 9
9
A
359 363Right-handed 310
Helix 10
10
A
364 375Right-handed alpha
Helix 11
11
A
376 378Right-handed 310
Helix 12
12
A
380 393Right-handed alpha
Helix 13
13
A
402 425Right-handed alpha
Helix 14
14
A
430 460Right-handed alpha
Helix 15
15
A
466 473Right-handed alpha
Helix 16
16
B
207 226Right-handed alpha
Helix 17
17
B
229 237Right-handed alpha
Helix 18
18
B
251 257Right-handed alpha
Helix 19
19
B
276 301Right-handed alpha
Helix 20
20
B
305 309Right-handed 310
Helix 21
21
B
310 333Right-handed alpha
Helix 22
22
B
342 344Right-handed 310
Helix 23
23
B
350 355Right-handed alpha
Helix 24
24
B
364 376Right-handed alpha
Helix 25
25
B
380 393Right-handed alpha
Helix 26
26
B
402 425Right-handed alpha
Helix 27
27
B
430 457Right-handed alpha
Helix 28
28
B
466 473Right-handed alpha
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There are 2 sheets in PDB entry 3HOD. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
346 349parallel
Strand 3
A
338 341anti-parallel
Strand 4
A
334 335anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 249first strand
Strand 2
B
346 349parallel
Strand 3
B
338 341anti-parallel
Strand 4
B
334 335anti-parallel
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