Analysis of interatomic Contacts of Structural Units in PDB entry:
3HOW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HOW entry

There are 16 chains in PDB entry 3HOW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 2PRO 1455
B
ASP 20PHE 1224
C
GLU 3ASP 268
D
VAL 3TYR 221
E
ASP 2MET 215
F
LEU 69LEU 155
G
MET 1ILE 171
H
SER 2ARG 146
I
THR 2LYS 115
J
MET 1PRO 65
K
MET 1LEU 114
L
LEU 27ARG 70
2
A 1 T 7
1
A 10 C 22
1
G 24 A 28
3
C 1 U 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are136 helices in PDB entry 3HOW. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
23 31Right-handed alpha
Helix 2
2
A
41 45Right-handed 310
Helix 3
3
A
95 104Right-handed alpha
Helix 4
4
A
119 128Right-handed alpha
Helix 5
5
A
130 144Right-handed alpha
Helix 6
6
A
203 213Right-handed alpha
Helix 7
7
A
215 222Right-handed alpha
Helix 8
8
A
230 233Right-handed 310
Helix 9
9
A
243 247Right-handed 310
Helix 10
10
A
260 278Right-handed alpha
Helix 11
11
A
285 303Right-handed alpha
Helix 12
12
A
324 330Right-handed alpha
Helix 13
13
A
334 340Right-handed alpha
Helix 14
14
A
368 372Right-handed alpha
Helix 15
15
A
384 395Right-handed alpha
Helix 16
16
A
451 453Right-handed 310
Helix 17
17
A
474 479Right-handed alpha
Helix 18
18
A
494 505Right-handed alpha
Helix 19
19
A
506 511Right-handed alpha
Helix 20
20
A
524 534Right-handed alpha
Helix 21
21
A
543 553Right-handed alpha
Helix 22
22
A
574 579Right-handed alpha
Helix 23
23
A
618 623Right-handed alpha
Helix 24
24
A
628 638Right-handed alpha
Helix 25
25
A
638 661Right-handed alpha
Helix 26
26
A
665 669Right-handed 310
Helix 27
27
A
672 696Right-handed alpha
Helix 28
28
A
709 736Right-handed alpha
Helix 29
29
A
741 750Right-handed alpha
Helix 30
30
A
754 763Right-handed alpha
Helix 31
31
A
793 798Right-handed alpha
Helix 32
32
A
809 846Right-handed alpha
Helix 33
33
A
867 871Right-handed 310
Helix 34
34
A
874 878Right-handed 310
Helix 35
35
A
884 887Right-handed 310
Helix 36
36
A
889 898Right-handed alpha
Helix 37
37
A
924 947Right-handed alpha
Helix 38
38
A
959 971Right-handed alpha
Helix 39
39
A
984 995Right-handed alpha
Helix 40
40
A
1004 1026Right-handed alpha
Helix 41
41
A
1027 1034Right-handed alpha
Helix 42
42
A
1038 1057Right-handed alpha
Helix 43
43
A
1063 1078Right-handed alpha
Helix 44
44
A
1097 1106Right-handed alpha
Helix 45
45
A
1127 1139Right-handed alpha
Helix 46
46
A
1166 1173Right-handed alpha
Helix 47
47
A
1198 1205Right-handed alpha
Helix 48
48
A
1208 1221Right-handed alpha
Helix 49
49
A
1256 1270Right-handed alpha
Helix 50
50
A
1312 1317Right-handed alpha
Helix 51
51
A
1331 1339Right-handed alpha
Helix 52
52
A
1340 1358Right-handed alpha
Helix 53
53
A
1364 1377Right-handed alpha
Helix 54
54
A
1388 1392Right-handed 310
Helix 55
55
A
1395 1401Right-handed alpha
Helix 56
56
A
1404 1414Right-handed alpha
Helix 57
57
A
1423 1431Right-handed alpha
Helix 58
58
A
1436 1439Right-handed 310
Helix 59
59
A
1448 1453Right-handed alpha
Helix 60
60
B
28 41Right-handed alpha
Helix 61
61
B
44 57Right-handed alpha
Helix 62
62
B
57 64Right-handed alpha
Helix 63
63
B
113 121Right-handed alpha
Helix 64
64
B
179 183Right-handed 310
Helix 65
65
B
185 193Right-handed alpha
Helix 66
66
B
282 289Right-handed alpha
Helix 67
67
B
296 302Right-handed alpha
Helix 68
68
B
307 322Right-handed alpha
Helix 69
69
B
326 333Right-handed alpha
Helix 70
70
B
346 356Right-handed alpha
Helix 71
71
B
370 389Right-handed alpha
Helix 72
72
B
400 402Right-handed 310
Helix 73
73
B
408 433Right-handed alpha
Helix 74
74
B
451 464Right-handed alpha
Helix 75
75
B
487 496Right-handed alpha
Helix 76
76
B
551 560Right-handed alpha
Helix 77
77
B
565 569Right-handed 310
Helix 78
78
B
592 605Right-handed alpha
Helix 79
79
B
654 666Right-handed alpha
Helix 80
80
B
680 687Right-handed alpha
Helix 81
81
B
695 699Right-handed alpha
Helix 82
82
B
744 748Right-handed 310
Helix 83
83
B
750 755Right-handed alpha
Helix 84
84
B
758 762Right-handed 310
Helix 85
85
B
763 774Right-handed alpha
Helix 86
86
B
784 788Right-handed 310
Helix 87
87
B
808 812Right-handed 310
Helix 88
88
B
843 848Right-handed alpha
Helix 89
89
B
1013 1017Right-handed 310
Helix 90
90
B
1022 1039Right-handed alpha
Helix 91
91
B
1051 1061Right-handed alpha
Helix 92
92
B
1098 1102Right-handed 310
Helix 93
93
B
1121 1125Right-handed 310
Helix 94
94
B
1131 1142Right-handed alpha
Helix 95
95
B
1143 1152Right-handed alpha
Helix 96
96
B
1197 1210Right-handed alpha
Helix 97
97
C
26 40Right-handed alpha
Helix 98
98
C
59 70Right-handed alpha
Helix 99
99
C
76 80Right-handed 310
Helix 100
100
C
82 86Right-handed 310
Helix 101
101
C
116 118Right-handed 310
Helix 102
102
C
196 201Right-handed alpha
Helix 103
103
C
204 208Right-handed 310
Helix 104
104
C
241 265Right-handed alpha
Helix 105
105
D
30 34Right-handed 310
Helix 106
106
D
53 70Right-handed alpha
Helix 107
107
D
121 134Right-handed alpha
Helix 108
108
D
138 151Right-handed alpha
Helix 109
109
D
158 168Right-handed alpha
Helix 110
110
D
175 183Right-handed alpha
Helix 111
111
D
187 195Right-handed alpha
Helix 112
112
D
203 218Right-handed alpha
Helix 113
113
E
2 4Right-handed 310
Helix 114
114
E
5 26Right-handed alpha
Helix 115
115
E
38 47Right-handed alpha
Helix 116
116
E
54 58Right-handed 310
Helix 117
117
E
65 72Right-handed alpha
Helix 118
118
E
89 103Right-handed alpha
Helix 119
119
E
120 127Right-handed 310
Helix 120
120
E
143 147Right-handed 310
Helix 121
121
E
157 169Right-handed alpha
Helix 122
122
E
171 175Right-handed 310
Helix 123
123
E
182 188Right-handed alpha
Helix 124
124
F
86 103Right-handed alpha
Helix 125
125
F
116 127Right-handed alpha
Helix 126
126
G
14 18Right-handed 310
Helix 127
127
G
22 33Right-handed alpha
Helix 128
128
G
113 115Right-handed 310
Helix 129
129
H
83 87Right-handed 310
Helix 130
130
J
17 27Right-handed alpha
Helix 131
131
J
31 39Right-handed alpha
Helix 132
132
J
43 53Right-handed alpha
Helix 133
133
J
56 62Right-handed alpha
Helix 134
134
K
5 10Right-handed 310
Helix 135
135
K
39 50Right-handed alpha
Helix 136
136
K
82 111Right-handed alpha
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There are 48 sheets in PDB entry 3HOW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1418 1419first strand
Strand 2
A
16 21anti-parallel
Strand 3
B
1212 1217anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
85 91first strand
Strand 2
A
235 238anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
151 153first strand
Strand 2
A
161 163anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
173 177first strand
Strand 2
A
180 184anti-parallel
Strand 3
A
200 202anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
343 345first strand
Strand 2
B
1128 1130anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
469 470first strand
Strand 2
A
363 367anti-parallel
Strand 3
A
455 463parallel
Strand 4
A
441 445anti-parallel
Strand 5
A
486 490anti-parallel
Strand 6
A
348 352anti-parallel
Strand 7
B
1104 1106anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
375 379first strand
Strand 2
A
431 435anti-parallel
Strand 3
A
402 407anti-parallel
Strand 4
A
411 414anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
512 513first strand
Strand 2
A
518 519anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
540 542first strand
Strand 2
A
571 573anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
588 589first strand
Strand 2
A
606 608anti-parallel
Strand 3
A
611 614anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
766 767first strand
Strand 2
A
799 800anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
849 850first strand
Strand 2
A
856 857anti-parallel
Strand 3
A
863 865anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
879 882first strand
Strand 2
A
953 956anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1283 1287first strand
Strand 2
A
1303 1307anti-parallel
Strand 3
A
1116 1119anti-parallel
Strand 4
A
1328 1329anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1141 1142first strand
Strand 2
A
1272 1274anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1226 1228first strand
Strand 2
A
1237 1240anti-parallel
Strand 3
A
1191 1197anti-parallel
Strand 4
A
1147 1154anti-parallel
Strand 5
I
42 45anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1290 1292first strand
Strand 2
A
1298 1300anti-parallel
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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
143 147first strand
Strand 2
F
132 137anti-parallel
Strand 3
A
1441 1445anti-parallel
Strand 4
G
59 61anti-parallel
Strand 5
G
68 73anti-parallel
Strand 6
G
8 13anti-parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
91 97first strand
Strand 2
B
127 133anti-parallel
Strand 3
B
165 169anti-parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
203 205first strand
Strand 2
B
208 211anti-parallel
Strand 3
B
481 482anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
404 407first strand
Strand 2
B
214 218anti-parallel
Strand 3
B
497 499parallel
Strand 4
B
536 538anti-parallel
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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
223 227first strand
Strand 2
B
236 242anti-parallel
Strand 3
B
252 256anti-parallel
Strand 4
B
270 272anti-parallel
Strand 5
B
280 281anti-parallel
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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
544 545first strand
Strand 2
B
633 639anti-parallel
Strand 3
B
690 694anti-parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
544 545first strand
Strand 2
B
633 639anti-parallel
Strand 3
B
740 741anti-parallel
Strand 4
B
703 704parallel
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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
585 590first strand
Strand 2
B
578 582anti-parallel
Strand 3
B
623 627parallel
Strand 4
B
614 618anti-parallel
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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
804 805first strand
Strand 2
B
1042 1043parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
821 822first strand
Strand 2
B
1091 1092anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
825 826first strand
Strand 2
B
1010 1011parallel
Strand 3
B
838 842anti-parallel
Strand 4
B
987 994parallel
Strand 5
B
979 981anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
853 857first strand
Strand 2
B
968 972anti-parallel
Strand 3
B
947 949anti-parallel
Strand 4
B
904 905anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
860 862first strand
Strand 2
B
961 965anti-parallel
Strand 3
B
953 957anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
873 874first strand
Strand 2
B
914 917anti-parallel
Strand 3
B
934 936anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1070 1073first strand
Strand 2
B
1080 1085anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1158 1163first strand
Strand 2
B
1191 1196anti-parallel
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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
17 22first strand
Strand 2
C
228 233anti-parallel
Strand 3
C
176 177anti-parallel
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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
45 49first strand
Strand 2
C
152 160anti-parallel
Strand 3
C
53 54anti-parallel
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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
45 49first strand
Strand 2
C
152 160anti-parallel
Strand 3
C
97 104anti-parallel
Strand 4
C
119 120anti-parallel
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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
111 114first strand
Strand 2
C
143 147anti-parallel
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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
36 38first strand
Strand 2
D
44 46anti-parallel
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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
60 62first strand
Strand 2
E
78 81anti-parallel
Strand 3
E
107 111parallel
Strand 4
E
131 135parallel
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There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
177 178first strand
Strand 2
E
206 214parallel
Strand 3
E
195 202anti-parallel
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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
3 5first strand
Strand 2
G
76 79anti-parallel
Strand 3
G
43 48anti-parallel
Strand 4
G
37 39anti-parallel
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There are 7 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
169 170first strand
Strand 2
G
142 153anti-parallel
Strand 3
G
156 162anti-parallel
Strand 4
G
107 111parallel
Strand 5
G
98 102anti-parallel
Strand 6
G
86 94anti-parallel
Strand 7
G
142 153anti-parallel
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There are 2 strands in AQ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
129 131first strand
Strand 2
G
136 138anti-parallel
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There are 9 strands in AR sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
96 98first strand
Strand 2
H
141 145anti-parallel
Strand 3
H
54 58anti-parallel
Strand 4
H
7 16anti-parallel
Strand 5
H
23 30anti-parallel
Strand 6
H
38 43anti-parallel
Strand 7
H
121 125anti-parallel
Strand 8
H
112 118anti-parallel
Strand 9
H
100 106anti-parallel
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There are 3 strands in AS sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
17 19first strand
Strand 2
I
24 28anti-parallel
Strand 3
I
35 37anti-parallel
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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
70 71first strand
Strand 2
I
83 84anti-parallel
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There are 2 strands in AU sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
86 87first strand
Strand 2
I
99 100anti-parallel
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There are 4 strands in AV sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
19 22first strand
Strand 2
K
30 36anti-parallel
Strand 3
K
70 77anti-parallel
Strand 4
K
56 62anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il