Analysis of interatomic Contacts of Structural Units in PDB entry:
3IBF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3IBF entry

There are 4 chains in PDB entry 3IBF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 57GLN 196
B
 LYS 212GLN 303
C
 ARG 352GLN 496
D
 LYS 512GLN 603
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3IBF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
79 83Right-handed 310
Helix 2
2
A
89 105Right-handed alpha
Helix 3
3
A
115 129Right-handed alpha
Helix 4
4
A
159 164Right-handed alpha
Helix 5
5
A
165 175Right-handed 310
Helix 6
6
B
240 253Right-handed alpha
Helix 7
7
B
257 271Right-handed alpha
Helix 8
8
B
279 283Right-handed 310
Helix 9
9
C
379 383Right-handed 310
Helix 10
10
C
389 404Right-handed alpha
Helix 11
11
C
415 428Right-handed alpha
Helix 12
12
C
459 465Right-handed alpha
Helix 13
13
C
471 475Right-handed 310
Helix 14
14
D
540 553Right-handed alpha
Helix 15
15
D
557 571Right-handed alpha
Helix 16
16
D
579 583Right-handed 310
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There are 5 sheets in PDB entry 3IBF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 112first strand
Strand 2
A
66 74parallel
Strand 3
A
134 142parallel
Strand 4
A
179 184parallel
Strand 5
B
219 223parallel
Strand 6
B
290 293anti-parallel
Strand 7
D
590 593anti-parallel
Strand 8
D
519 523anti-parallel
Strand 9
C
479 484parallel
Strand 10
C
434 442parallel
Strand 11
C
366 374parallel
Strand 12
C
407 412parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
149 151anti-parallel
Strand 3
A
156 158anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 234first strand
Strand 2
B
238 239anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
445 446first strand
Strand 2
C
449 451anti-parallel
Strand 3
C
456 458anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
533 534first strand
Strand 2
D
538 539anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il