Analysis of interatomic Contacts of Structural Units in PDB entry:
3IN5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3IN5 entry

There are 8 chains in PDB entry 3IN5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 25ASN 518
B
 ASN 22ASN 518
P
 G 3 T 12
T
 C 2 A 4
T
 G 6 C 16
Q
 G 2 T 12
U
 A 4 A 4
U
 G 6 C 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3IN5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 43Right-handed alpha
Helix 2
2
A
47 73Right-handed alpha
Helix 3
3
A
75 96Right-handed alpha
Helix 4
4
A
110 120Right-handed alpha
Helix 5
5
A
121 126Right-handed 310
Helix 6
6
A
140 146Right-handed alpha
Helix 7
7
A
153 161Right-handed alpha
Helix 8
8
A
170 189Right-handed alpha
Helix 9
9
A
204 211Right-handed alpha
Helix 10
10
A
212 214Right-handed 310
Helix 11
11
A
215 218Right-handed 310
Helix 12
12
A
289 306Right-handed alpha
Helix 13
13
A
316 327Right-handed alpha
Helix 14
14
A
338 347Right-handed alpha
Helix 15
15
A
348 349Right-handed 310
Helix 16
16
A
350 354Right-handed 310
Helix 17
17
A
358 368Right-handed alpha
Helix 18
18
A
372 379Right-handed alpha
Helix 19
19
A
379 387Right-handed alpha
Helix 20
20
A
388 400Right-handed alpha
Helix 21
21
A
427 449Right-handed alpha
Helix 22
22
A
480 499Right-handed alpha
Helix 23
23
B
32 45Right-handed alpha
Helix 24
24
B
47 72Right-handed alpha
Helix 25
25
B
75 96Right-handed alpha
Helix 26
26
B
110 120Right-handed alpha
Helix 27
27
B
121 124Right-handed 310
Helix 28
28
B
140 145Right-handed alpha
Helix 29
29
B
153 160Right-handed alpha
Helix 30
30
B
170 189Right-handed alpha
Helix 31
31
B
204 212Right-handed alpha
Helix 32
32
B
216 220Right-handed 310
Helix 33
33
B
289 306Right-handed alpha
Helix 34
34
B
316 327Right-handed alpha
Helix 35
35
B
338 347Right-handed alpha
Helix 36
36
B
350 354Right-handed 310
Helix 37
37
B
358 367Right-handed alpha
Helix 38
38
B
372 379Right-handed alpha
Helix 39
39
B
379 387Right-handed alpha
Helix 40
40
B
388 401Right-handed alpha
Helix 41
41
B
427 448Right-handed alpha
Helix 42
42
B
480 498Right-handed alpha
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There are 8 sheets in PDB entry 3IN5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
199 203anti-parallel
Strand 3
A
103 108anti-parallel
Strand 4
A
309 314anti-parallel
Strand 5
A
332 334parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
128 132anti-parallel
Strand 3
A
165 167parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 221first strand
Strand 2
A
284 285anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 425first strand
Strand 2
A
506 514anti-parallel
Strand 3
A
455 462anti-parallel
Strand 4
A
467 473anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 196first strand
Strand 2
B
199 203anti-parallel
Strand 3
B
103 108anti-parallel
Strand 4
B
309 314anti-parallel
Strand 5
B
332 334parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 139first strand
Strand 2
B
128 132anti-parallel
Strand 3
B
165 167parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
415 425first strand
Strand 2
B
506 514anti-parallel
Strand 3
B
453 462anti-parallel
Strand 4
B
467 468anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
415 425first strand
Strand 2
B
506 514anti-parallel
Strand 3
B
453 462anti-parallel
Strand 4
B
471 478anti-parallel
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