Analysis of interatomic Contacts of Structural Units in PDB entry:
3J0A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J0A entry

There are 2 chains in PDB entry 3J0A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 23LYS 845
B
SER 23ARG 664
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3J0A. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
163 168Right-handed 310
Helix 2
2
A
187 189Right-handed 310
Helix 3
3
A
190 196Right-handed alpha
Helix 4
4
A
244 249Right-handed 310
Helix 5
5
A
276 280Right-handed 310
Helix 6
6
A
440 445Right-handed alpha
Helix 7
7
A
510 515Right-handed alpha
Helix 8
8
A
589 597Right-handed alpha
Helix 9
9
A
604 608Right-handed 310
Helix 10
10
A
640 656Right-handed alpha
Helix 11
11
A
659 664Right-handed alpha
Helix 12
12
A
683 687Right-handed 310
Helix 13
13
A
703 710Right-handed alpha
Helix 14
14
A
710 717Right-handed alpha
Helix 15
15
A
739 751Right-handed alpha
Helix 16
16
A
761 766Right-handed alpha
Helix 17
17
A
769 777Right-handed alpha
Helix 18
18
A
807 812Right-handed alpha
Helix 19
19
A
826 833Right-handed alpha
Helix 20
20
B
163 168Right-handed 310
Helix 21
21
B
187 189Right-handed 310
Helix 22
22
B
190 196Right-handed alpha
Helix 23
23
B
239 244Right-handed alpha
Helix 24
24
B
245 249Right-handed 310
Helix 25
25
B
281 286Right-handed alpha
Helix 26
26
B
438 445Right-handed alpha
Helix 27
27
B
510 515Right-handed alpha
Helix 28
28
B
588 597Right-handed alpha
Helix 29
29
B
598 602Right-handed 310
Helix 30
30
B
604 608Right-handed 310
Helix 31
31
B
640 652Right-handed alpha
Helix 32
32
B
654 661Right-handed alpha
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There are 10 sheets in PDB entry 3J0A. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
29 33first strand
Strand 2
A
50 54parallel
Strand 3
A
74 77parallel
Strand 4
A
99 101parallel
Strand 5
A
124 125parallel
Strand 6
A
149 153parallel
Strand 7
A
174 178parallel
Strand 8
A
202 203parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
60 61first strand
Strand 2
A
85 86parallel
Strand 3
A
109 110parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
257 259first strand
Strand 2
A
292 294parallel
Strand 3
A
316 320parallel
Strand 4
A
340 344parallel
Strand 5
A
364 366parallel
Strand 6
A
388 392parallel
Strand 7
A
407 411parallel
Strand 8
A
427 429parallel
Strand 9
A
452 456parallel
Strand 10
A
479 481parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
302 303first strand
Strand 2
A
326 327parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
504 505first strand
Strand 2
A
530 534parallel
Strand 3
A
552 558parallel
Strand 4
A
573 579parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
727 728first strand
Strand 2
A
695 698parallel
Strand 3
A
753 758parallel
Strand 4
A
787 791parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
29 33first strand
Strand 2
B
50 54parallel
Strand 3
B
74 77parallel
Strand 4
B
99 101parallel
Strand 5
B
124 125parallel
Strand 6
B
149 153parallel
Strand 7
B
174 178parallel
Strand 8
B
202 203parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
60 61first strand
Strand 2
B
85 86parallel
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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
257 259first strand
Strand 2
B
292 294parallel
Strand 3
B
316 318parallel
Strand 4
B
340 342parallel
Strand 5
B
364 366parallel
Strand 6
B
388 390parallel
Strand 7
B
407 409parallel
Strand 8
B
427 429parallel
Strand 9
B
452 454parallel
Strand 10
B
477 479parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
504 505first strand
Strand 2
B
530 534parallel
Strand 3
B
552 558parallel
Strand 4
B
573 579parallel
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