Analysis of interatomic Contacts of Structural Units in PDB entry:
3J5L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J5L entry

There are 34 chains in PDB entry 3J5L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
0	ALA 1	LYS 56
1	GLY 3	LYS 52
2	MET 1	LYS 46
3	PRO 1	ALA 64
4	MET 1	GLY 38
5	C 75	C 75
6	VAL 3	ASP 10
7	C 74	A 76
A	G 1	U 2903
B	G 2	A 119
C	ALA 1	SER 271
D	MET 1	ALA 209
E	MET 1	ALA 201
F	ALA 1	ARG 177
G	SER 1	LYS 176
H	MET 1	ALA 56
I	ALA 1	ASP 141
J	MET 1	ILE 142
K	MET 1	VAL 122
L	ARG 2	GLU 144
M	MET 1	MET 136
N	MET 1	GLU 120
O	ASP 2	PHE 117
P	SER 1	ASN 114
Q	ALA 1	ALA 117
R	MET 1	ALA 103
S	MET 1	ARG 110
T	MET 1	LEU 93
U	ALA 1	ILE 102
V	MET 1	ALA 94
W	GLY 6	GLU 84
X	SER 1	TYR 77
Y	MET 1	ALA 63
Z	ALA 1	GLU 58

There are 93 helices in PDB entry 3J5L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	0	8	16	Right-handed alpha
Helix 2	2	0	17	19	Right-handed 310
Helix 3	3	2	8	17	Right-handed alpha
Helix 4	4	2	17	22	Right-handed alpha
Helix 5	5	2	24	37	Right-handed alpha
Helix 6	6	3	8	12	Right-handed 310
Helix 7	7	3	36	42	Right-handed alpha
Helix 8	8	3	53	61	Right-handed alpha
Helix 9	9	4	30	34	Right-handed 310
Helix 10	10	C	29	31	Right-handed 310
Helix 11	11	C	132	134	Right-handed 310
Helix 12	12	C	197	202	Right-handed 310
Helix 13	13	C	206	212	Right-handed alpha
Helix 14	14	C	220	224	Right-handed 310
Helix 15	15	D	56	60	Right-handed 310
Helix 16	16	D	61	70	Right-handed alpha
Helix 17	17	D	97	102	Right-handed 310
Helix 18	18	D	119	124	Right-handed alpha
Helix 19	19	E	15	20	Right-handed alpha
Helix 20	20	E	24	37	Right-handed alpha
Helix 21	21	E	97	115	Right-handed alpha
Helix 22	22	E	130	142	Right-handed alpha
Helix 23	23	E	155	160	Right-handed alpha
Helix 24	24	E	176	183	Right-handed alpha
Helix 25	25	E	189	201	Right-handed alpha
Helix 26	26	F	2	9	Right-handed alpha
Helix 27	27	F	11	20	Right-handed alpha
Helix 28	28	F	23	27	Right-handed 310
Helix 29	29	F	45	60	Right-handed alpha
Helix 30	30	F	91	106	Right-handed alpha
Helix 31	31	F	141	145	Right-handed 310
Helix 32	32	F	161	172	Right-handed alpha
Helix 33	33	G	61	78	Right-handed alpha
Helix 34	34	G	136	150	Right-handed alpha
Helix 35	35	H	9	13	Right-handed 310
Helix 36	36	H	22	27	Right-handed alpha
Helix 37	37	H	41	47	Right-handed alpha
Helix 38	39	I	13	17	Right-handed 310
Helix 39	40	I	35	39	Right-handed 310
Helix 40	41	I	41	49	Right-handed alpha
Helix 41	42	I	74	78	Right-handed 310
Helix 42	43	I	105	111	Right-handed alpha
Helix 43	44	I	123	132	Right-handed alpha
Helix 44	45	J	26	37	Right-handed alpha
Helix 45	46	J	58	62	Right-handed 310
Helix 46	47	J	67	72	Right-handed alpha
Helix 47	48	J	88	95	Right-handed alpha
Helix 48	49	J	97	107	Right-handed alpha
Helix 49	50	J	112	121	Right-handed alpha
Helix 50	51	J	132	136	Right-handed 310
Helix 51	52	K	104	108	Right-handed 310
Helix 52	53	K	112	118	Right-handed alpha
Helix 53	54	L	56	61	Right-handed alpha
Helix 54	55	L	70	72	Right-handed 310
Helix 55	56	L	128	138	Right-handed alpha
Helix 56	57	M	43	58	Right-handed alpha
Helix 57	58	M	109	122	Right-handed alpha
Helix 58	59	N	13	32	Right-handed alpha
Helix 59	60	N	38	56	Right-handed alpha
Helix 60	61	N	59	69	Right-handed alpha
Helix 61	62	N	72	82	Right-handed alpha
Helix 62	63	N	82	87	Right-handed alpha
Helix 63	64	O	3	21	Right-handed alpha
Helix 64	65	O	67	85	Right-handed alpha
Helix 65	66	O	103	112	Right-handed alpha
Helix 66	67	P	2	10	Right-handed alpha
Helix 67	68	P	52	55	Right-handed 310
Helix 68	69	P	96	102	Right-handed 310
Helix 69	70	P	103	108	Right-handed 310
Helix 70	71	Q	6	19	Right-handed alpha
Helix 71	72	Q	24	29	Right-handed 310
Helix 72	73	Q	30	71	Right-handed alpha
Helix 73	74	Q	74	85	Right-handed alpha
Helix 74	75	Q	96	101	Right-handed alpha
Helix 75	76	Q	101	117	Right-handed alpha
Helix 76	77	S	14	25	Right-handed alpha
Helix 77	78	S	28	38	Right-handed alpha
Helix 78	79	S	41	62	Right-handed alpha
Helix 79	80	S	89	91	Right-handed 310
Helix 80	81	T	17	24	Right-handed alpha
Helix 81	82	T	40	50	Right-handed alpha
Helix 82	83	V	13	23	Right-handed alpha
Helix 83	84	V	44	51	Right-handed alpha
Helix 84	85	V	52	58	Right-handed 310
Helix 85	86	X	53	60	Right-handed alpha
Helix 86	87	X	62	67	Right-handed alpha
Helix 87	88	X	67	72	Right-handed alpha
Helix 88	89	Y	9	23	Right-handed alpha
Helix 89	90	Y	23	34	Right-handed alpha
Helix 90	91	Y	40	56	Right-handed alpha
Helix 91	92	Z	16	27	Right-handed alpha
Helix 92	93	Z	40	50	Right-handed alpha
Helix 93	94	Z	51	54	Right-handed 310

There are 47 sheets in PDB entry 3J5L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	27	29	first strand
Strand 2	0	36	38	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	19	24	first strand
Strand 2	1	6	12	anti-parallel
Strand 3	1	44	49	anti-parallel
Strand 4	1	35	39	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	17	19	first strand
Strand 2	4	22	24	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	4	first strand
Strand 2	C	16	18	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	61	62	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	75	first strand
Strand 2	C	115	116	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	82	first strand
Strand 2	C	89	92	anti-parallel
Strand 3	C	102	103	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	130	first strand
Strand 2	C	188	190	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	165	first strand
Strand 2	C	171	174	anti-parallel
Strand 3	C	180	183	anti-parallel
Strand 4	C	266	268	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	20	28	anti-parallel
Strand 3	D	186	190	anti-parallel
Strand 4	D	177	181	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	20	28	anti-parallel
Strand 3	D	4	8	anti-parallel
Strand 4	D	200	203	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	38	first strand
Strand 2	D	47	51	anti-parallel
Strand 3	D	80	83	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	150	first strand
Strand 2	E	170	171	parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	66	first strand
Strand 2	F	86	90	anti-parallel
Strand 3	F	30	36	anti-parallel
Strand 4	F	155	157	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	41	43	first strand
Strand 2	G	50	52	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	121	123	first strand
Strand 2	G	129	133	anti-parallel
Strand 3	G	86	89	anti-parallel
Strand 4	G	160	161	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	101	102	first strand
Strand 2	G	114	115	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	5	first strand
Strand 2	H	36	37	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	53	57	first strand
Strand 2	J	15	19	parallel
Strand 3	J	138	139	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	75	77	first strand
Strand 2	J	84	86	anti-parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	10	first strand
Strand 2	K	19	24	anti-parallel
Strand 3	K	38	43	anti-parallel
Strand 4	K	57	64	anti-parallel
Strand 5	K	83	87	anti-parallel
Strand 6	K	5	10	parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	76	79	first strand
Strand 2	P	69	74	anti-parallel
Strand 3	P	57	61	anti-parallel
Strand 4	P	45	49	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	74	76	first strand
Strand 2	L	107	109	parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	89	90	first strand
Strand 2	L	121	122	parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	63	65	first strand
Strand 2	M	101	105	anti-parallel
Strand 3	M	31	34	anti-parallel
Strand 4	M	129	132	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	39	42	first strand
Strand 2	M	93	96	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	74	75	first strand
Strand 2	M	88	89	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	33	37	first strand
Strand 2	N	110	115	anti-parallel
Strand 3	N	95	99	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	47	52	first strand
Strand 2	O	35	40	anti-parallel
Strand 3	O	25	30	anti-parallel
Strand 4	O	91	93	parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	39	43	first strand
Strand 2	P	26	30	anti-parallel
Strand 3	P	82	84	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	11	14	first strand
Strand 2	R	2	6	anti-parallel
Strand 3	R	38	42	anti-parallel
Strand 4	R	47	48	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	20	23	first strand
Strand 2	R	92	96	anti-parallel
Strand 3	R	59	68	anti-parallel
Strand 4	R	32	35	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	72	78	first strand
Strand 2	R	83	89	anti-parallel

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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	4	10	first strand
Strand 2	S	101	108	anti-parallel
Strand 3	S	70	78	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	82	83	first strand
Strand 2	S	97	98	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	86	87	first strand
Strand 2	S	93	94	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	11	14	first strand
Strand 2	T	32	34	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	61	63	first strand
Strand 2	T	80	82	anti-parallel

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There are 5 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	64	65	first strand
Strand 2	U	32	35	anti-parallel
Strand 3	U	21	28	anti-parallel
Strand 4	U	9	12	anti-parallel
Strand 5	U	69	71	anti-parallel

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There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	40	43	first strand
Strand 2	U	58	61	anti-parallel

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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	3	5	first strand
Strand 2	V	62	64	parallel

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There are 5 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	7	8	first strand
Strand 2	V	38	43	anti-parallel
Strand 3	V	25	31	anti-parallel
Strand 4	V	86	93	parallel
Strand 5	V	72	79	anti-parallel

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There are 2 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	49	50	first strand
Strand 2	W	59	60	anti-parallel

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There are 2 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	65	66	first strand
Strand 2	W	81	82	anti-parallel

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There are 2 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	12	14	first strand
Strand 2	X	26	28	anti-parallel

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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	35	38	first strand
Strand 2	X	45	48	anti-parallel

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There are 3 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	35	37	first strand
Strand 2	Z	4	7	anti-parallel
Strand 3	Z	55	57	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J5L

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J5L