Analysis of interatomic Contacts of Structural Units in PDB entry:
3J82


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J82 entry

There are 7 chains in PDB entry 3J82 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
CYS 134ILE 264
B
ASP 2GLU 72
B
GLY 74PHE 375
C
ASP 2GLU 72
C
GLY 74PHE 375
D
ASP 2GLU 72
D
GLY 74PHE 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 3J82. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
157 169Right-handed alpha
Helix 2
2
A
177 185Right-handed alpha
Helix 3
3
A
186 188Right-handed 310
Helix 4
4
A
218 222Right-handed 310
Helix 5
5
B
54 61Right-handed alpha
Helix 6
6
B
78 92Right-handed alpha
Helix 7
7
B
112 126Right-handed alpha
Helix 8
8
B
137 146Right-handed alpha
Helix 9
9
B
181 196Right-handed alpha
Helix 10
10
B
202 217Right-handed alpha
Helix 11
11
B
222 233Right-handed alpha
Helix 12
12
B
234 237Right-handed 310
Helix 13
13
B
251 257Right-handed alpha
Helix 14
14
B
258 263Right-handed alpha
Helix 15
15
B
273 285Right-handed alpha
Helix 16
16
B
286 296Right-handed alpha
Helix 17
17
B
301 306Right-handed 310
Helix 18
18
B
308 321Right-handed alpha
Helix 19
19
B
337 349Right-handed alpha
Helix 20
20
B
350 356Right-handed 310
Helix 21
21
B
359 366Right-handed alpha
Helix 22
22
B
367 370Right-handed 310
Helix 23
23
C
54 61Right-handed alpha
Helix 24
24
C
78 92Right-handed alpha
Helix 25
25
C
97 101Right-handed 310
Helix 26
26
C
112 126Right-handed alpha
Helix 27
27
C
137 146Right-handed alpha
Helix 28
28
C
182 196Right-handed alpha
Helix 29
29
C
202 217Right-handed alpha
Helix 30
30
C
222 231Right-handed alpha
Helix 31
31
C
234 237Right-handed 310
Helix 32
32
C
251 263Right-handed alpha
Helix 33
33
C
273 285Right-handed alpha
Helix 34
34
C
289 296Right-handed alpha
Helix 35
35
C
301 306Right-handed 310
Helix 36
36
C
308 321Right-handed alpha
Helix 37
37
C
337 349Right-handed alpha
Helix 38
38
C
350 356Right-handed 310
Helix 39
39
C
359 366Right-handed alpha
Helix 40
40
C
367 372Right-handed alpha
Helix 41
41
D
54 61Right-handed alpha
Helix 42
42
D
78 92Right-handed alpha
Helix 43
43
D
112 126Right-handed alpha
Helix 44
44
D
137 146Right-handed alpha
Helix 45
45
D
181 197Right-handed alpha
Helix 46
46
D
202 217Right-handed alpha
Helix 47
47
D
222 233Right-handed alpha
Helix 48
48
D
234 237Right-handed 310
Helix 49
49
D
252 263Right-handed alpha
Helix 50
50
D
264 267Right-handed 310
Helix 51
51
D
273 284Right-handed alpha
Helix 52
52
D
289 296Right-handed alpha
Helix 53
53
D
301 306Right-handed 310
Helix 54
54
D
308 321Right-handed alpha
Helix 55
55
D
337 349Right-handed alpha
Helix 56
56
D
350 356Right-handed 310
Helix 57
57
D
359 366Right-handed alpha
Helix 58
58
D
367 372Right-handed alpha
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There are 15 sheets in PDB entry 3J82. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
142 144first strand
Strand 2
A
147 156anti-parallel
Strand 3
A
251 258anti-parallel
Strand 4
A
171 172anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
142 144first strand
Strand 2
A
147 156anti-parallel
Strand 3
A
251 258anti-parallel
Strand 4
A
195 197parallel
Strand 5
A
236 238anti-parallel
Strand 6
A
241 243anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
201 202first strand
Strand 2
A
209 210anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
29 32first strand
Strand 2
B
16 21anti-parallel
Strand 3
B
8 12anti-parallel
Strand 4
B
103 107parallel
Strand 5
B
131 136parallel
Strand 6
B
357 358anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
169 170first strand
Strand 2
B
160 166anti-parallel
Strand 3
B
150 155anti-parallel
Strand 4
B
297 300parallel
Strand 5
B
329 330parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
239 241first strand
Strand 2
B
247 249anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
8 10first strand
Strand 2
C
103 107parallel
Strand 3
C
131 136parallel
Strand 4
C
357 358anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
16 19first strand
Strand 2
C
29 32anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
169 170first strand
Strand 2
C
160 166anti-parallel
Strand 3
C
176 178anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
169 170first strand
Strand 2
C
160 166anti-parallel
Strand 3
C
150 155anti-parallel
Strand 4
C
297 300parallel
Strand 5
C
329 330parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
239 241first strand
Strand 2
C
247 249anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
29 32first strand
Strand 2
D
16 21anti-parallel
Strand 3
D
8 11anti-parallel
Strand 4
D
103 107parallel
Strand 5
D
131 136parallel
Strand 6
D
357 358anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
169 170first strand
Strand 2
D
160 166anti-parallel
Strand 3
D
176 178anti-parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
169 170first strand
Strand 2
D
160 166anti-parallel
Strand 3
D
150 155anti-parallel
Strand 4
D
297 300parallel
Strand 5
D
329 330parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
239 241first strand
Strand 2
D
247 249anti-parallel
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