Analysis of interatomic Contacts of Structural Units in PDB entry:
3J8G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J8G entry

There are 32 chains in PDB entry 3J8G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	G 2	C 118
B	G 1	U 2903
0	SER 1	TYR 77
K	MET 1	GLU 121
L	ARG 2	GLU 144
1	MET 1	ALA 63
M	MET 1	MET 136
N	MET 1	GLU 120
O	ASP 2	PHE 117
P	SER 1	ASN 114
Q	ALA 1	ALA 117
R	MET 1	ALA 103
S	MET 1	ARG 110
D	MET 1	ALA 209
T	MET 1	LEU 93
2	ALA 1	GLU 58
U	ALA 2	ILE 102
W	MET 1	ALA 94
X	MET 1	ASN 462
E	MET 1	ALA 201
Y	GLY 6	GLU 84
3	ALA 1	LYS 56
5	MET 1	ASN 234
6	MET 1	LYS 46
7	PRO 1	ALA 64
8	MET 1	GLY 38
C	ALA 1	SER 271
F	ALA 1	LYS 178
G	SER 1	LYS 176
H	MET 1	GLU 149
I	ALA 1	ASP 141
J	MET 1	ILE 142

There are105 helices in PDB entry 3J8G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	0	53	62	Right-handed alpha
Helix 2	2	0	62	67	Right-handed alpha
Helix 3	3	K	104	108	Right-handed 310
Helix 4	4	K	109	113	Right-handed 310
Helix 5	5	K	114	118	Right-handed 310
Helix 6	6	L	57	61	Right-handed 310
Helix 7	7	L	78	82	Right-handed 310
Helix 8	8	L	94	99	Right-handed alpha
Helix 9	9	L	128	134	Right-handed alpha
Helix 10	10	1	2	8	Right-handed alpha
Helix 11	11	1	9	22	Right-handed alpha
Helix 12	12	1	25	33	Right-handed alpha
Helix 13	13	1	39	59	Right-handed alpha
Helix 14	14	M	43	57	Right-handed alpha
Helix 15	15	M	109	121	Right-handed alpha
Helix 16	16	N	13	32	Right-handed alpha
Helix 17	17	N	38	57	Right-handed alpha
Helix 18	18	N	60	65	Right-handed alpha
Helix 19	19	N	65	70	Right-handed alpha
Helix 20	20	N	74	82	Right-handed alpha
Helix 21	21	N	84	88	Right-handed 310
Helix 22	22	O	3	10	Right-handed alpha
Helix 23	23	O	10	22	Right-handed alpha
Helix 24	24	O	72	83	Right-handed alpha
Helix 25	25	O	110	114	Right-handed 310
Helix 26	26	P	5	10	Right-handed alpha
Helix 27	27	P	33	35	Right-handed 310
Helix 28	28	P	97	102	Right-handed alpha
Helix 29	29	Q	8	18	Right-handed alpha
Helix 30	30	Q	24	29	Right-handed alpha
Helix 31	31	Q	31	34	Right-handed 310
Helix 32	32	Q	35	71	Right-handed alpha
Helix 33	33	Q	74	83	Right-handed alpha
Helix 34	34	Q	92	96	Right-handed 310
Helix 35	35	Q	97	100	Right-handed 310
Helix 36	36	Q	101	115	Right-handed alpha
Helix 37	37	S	13	25	Right-handed alpha
Helix 38	38	S	31	37	Right-handed alpha
Helix 39	39	S	43	55	Right-handed alpha
Helix 40	40	D	62	70	Right-handed alpha
Helix 41	41	D	97	103	Right-handed 310
Helix 42	42	T	22	27	Right-handed alpha
Helix 43	43	T	40	50	Right-handed alpha
Helix 44	44	2	19	26	Right-handed alpha
Helix 45	45	2	42	50	Right-handed alpha
Helix 46	46	U	65	69	Right-handed 310
Helix 47	47	W	13	23	Right-handed alpha
Helix 48	48	W	44	53	Right-handed alpha
Helix 49	49	X	14	21	Right-handed alpha
Helix 50	50	X	68	82	Right-handed alpha
Helix 51	51	X	96	110	Right-handed alpha
Helix 52	52	X	131	136	Right-handed 310
Helix 53	53	X	150	165	Right-handed alpha
Helix 54	54	X	214	224	Right-handed alpha
Helix 55	55	X	272	285	Right-handed alpha
Helix 56	56	X	299	313	Right-handed alpha
Helix 57	57	X	332	343	Right-handed alpha
Helix 58	58	X	360	377	Right-handed alpha
Helix 59	59	X	380	396	Right-handed alpha
Helix 60	60	X	431	446	Right-handed alpha
Helix 61	61	E	24	38	Right-handed alpha
Helix 62	62	E	48	52	Right-handed 310
Helix 63	63	E	97	108	Right-handed alpha
Helix 64	64	E	108	113	Right-handed alpha
Helix 65	65	E	130	141	Right-handed alpha
Helix 66	66	E	154	163	Right-handed alpha
Helix 67	67	E	176	183	Right-handed alpha
Helix 68	68	E	190	200	Right-handed alpha
Helix 69	69	3	8	16	Right-handed alpha
Helix 70	70	5	5	16	Right-handed alpha
Helix 71	71	5	22	31	Right-handed alpha
Helix 72	72	5	84	91	Right-handed alpha
Helix 73	73	5	97	105	Right-handed alpha
Helix 74	74	5	120	125	Right-handed alpha
Helix 75	75	5	149	159	Right-handed alpha
Helix 76	76	5	181	199	Right-handed alpha
Helix 77	77	6	8	14	Right-handed alpha
Helix 78	78	6	25	37	Right-handed alpha
Helix 79	79	7	8	12	Right-handed 310
Helix 80	80	7	36	42	Right-handed alpha
Helix 81	81	7	53	58	Right-handed alpha
Helix 82	82	8	30	34	Right-handed 310
Helix 83	83	C	29	31	Right-handed 310
Helix 84	84	C	206	212	Right-handed alpha
Helix 85	85	C	220	224	Right-handed 310
Helix 86	86	F	4	9	Right-handed alpha
Helix 87	87	F	11	16	Right-handed alpha
Helix 88	88	F	48	60	Right-handed alpha
Helix 89	89	F	91	99	Right-handed alpha
Helix 90	90	F	161	169	Right-handed alpha
Helix 91	91	G	60	78	Right-handed alpha
Helix 92	92	G	136	149	Right-handed alpha
Helix 93	93	H	22	27	Right-handed alpha
Helix 94	94	H	42	58	Right-handed alpha
Helix 95	95	H	62	69	Right-handed alpha
Helix 96	96	H	69	74	Right-handed alpha
Helix 97	97	I	24	29	Right-handed alpha
Helix 98	98	I	74	84	Right-handed alpha
Helix 99	99	I	101	113	Right-handed alpha
Helix 100	100	I	114	116	Right-handed 310
Helix 101	101	I	120	134	Right-handed alpha
Helix 102	102	J	28	38	Right-handed alpha
Helix 103	103	J	88	95	Right-handed alpha
Helix 104	104	J	98	107	Right-handed alpha
Helix 105	105	J	112	121	Right-handed alpha

There are 53 sheets in PDB entry 3J8G. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, BA,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	33	35	first strand
Strand 2	0	48	50	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	7	10	first strand
Strand 2	K	19	24	anti-parallel
Strand 3	K	38	43	anti-parallel
Strand 4	K	57	62	anti-parallel
Strand 5	K	83	87	anti-parallel
Strand 6	K	7	10	parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	69	71	first strand
Strand 2	K	75	78	anti-parallel
Strand 3	P	70	71	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	74	77	first strand
Strand 2	L	107	110	parallel
Strand 3	L	126	127	parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	62	65	first strand
Strand 2	M	101	106	anti-parallel
Strand 3	M	31	35	anti-parallel
Strand 4	M	128	131	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	39	41	first strand
Strand 2	M	89	96	anti-parallel
Strand 3	M	71	74	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	33	37	first strand
Strand 2	N	109	115	anti-parallel
Strand 3	N	95	96	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	33	37	first strand
Strand 2	N	109	115	anti-parallel
Strand 3	N	101	102	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	47	52	first strand
Strand 2	O	34	40	anti-parallel
Strand 3	O	25	31	anti-parallel
Strand 4	O	91	92	parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	36	40	first strand
Strand 2	P	26	32	anti-parallel
Strand 3	P	82	84	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	3	7	first strand
Strand 2	R	10	14	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	20	22	first strand
Strand 2	R	92	96	anti-parallel
Strand 3	R	59	68	anti-parallel
Strand 4	R	32	35	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	72	75	first strand
Strand 2	R	86	89	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	4	10	first strand
Strand 2	S	92	109	anti-parallel
Strand 3	S	69	89	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	181	first strand
Strand 2	D	186	190	anti-parallel
Strand 3	D	21	28	anti-parallel
Strand 4	D	4	15	anti-parallel
Strand 5	D	200	203	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	37	first strand
Strand 2	D	48	51	anti-parallel
Strand 3	D	81	82	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	112	first strand
Strand 2	D	169	170	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	31	33	first strand
Strand 2	T	80	84	anti-parallel
Strand 3	T	59	63	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	66	67	first strand
Strand 2	T	76	77	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	35	38	first strand
Strand 2	2	3	7	anti-parallel
Strand 3	2	55	57	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	9	10	first strand
Strand 2	U	22	23	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	26	27	first strand
Strand 2	U	33	34	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	40	44	first strand
Strand 2	U	57	61	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	71	72	first strand
Strand 2	U	77	78	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	82	83	first strand
Strand 2	U	94	95	anti-parallel

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There are 7 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	4	8	first strand
Strand 2	W	38	43	anti-parallel
Strand 3	W	25	31	anti-parallel
Strand 4	W	83	93	parallel
Strand 5	W	68	80	anti-parallel
Strand 6	W	61	65	anti-parallel
Strand 7	W	4	8	parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	7	8	first strand
Strand 2	X	85	89	parallel
Strand 3	X	113	117	parallel
Strand 4	X	140	142	parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	45	47	first strand
Strand 2	X	50	52	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	205	209	first strand
Strand 2	X	287	292	parallel
Strand 3	X	315	321	parallel
Strand 4	X	352	353	parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	244	247	first strand
Strand 2	X	250	253	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	410	414	first strand
Strand 2	X	419	423	anti-parallel
Strand 3	X	454	458	parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	121	first strand
Strand 2	E	186	189	parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	65	66	first strand
Strand 2	Y	81	82	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	27	28	first strand
Strand 2	3	37	38	anti-parallel

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There are 5 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	20	21	first strand
Strand 2	5	221	224	parallel
Strand 3	5	212	215	anti-parallel
Strand 4	5	41	47	anti-parallel
Strand 5	5	170	177	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	61	63	first strand
Strand 2	5	161	163	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	75	77	first strand
Strand 2	5	113	115	parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	22	23	first strand
Strand 2	7	47	48	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	8	17	19	first strand
Strand 2	8	22	24	anti-parallel

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There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	4	first strand
Strand 2	C	16	18	anti-parallel

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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	61	62	anti-parallel

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There are 4 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	103	first strand
Strand 2	C	90	95	anti-parallel
Strand 3	C	75	81	anti-parallel
Strand 4	C	114	115	anti-parallel

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There are 7 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	130	first strand
Strand 2	C	188	191	anti-parallel
Strand 3	C	139	141	anti-parallel
Strand 4	C	161	165	anti-parallel
Strand 5	C	171	175	anti-parallel
Strand 6	C	179	183	anti-parallel
Strand 7	C	266	268	anti-parallel

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There are 5 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	68	first strand
Strand 2	F	83	89	anti-parallel
Strand 3	F	34	36	anti-parallel
Strand 4	F	152	154	anti-parallel
Strand 5	F	128	130	anti-parallel

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There are 2 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	17	first strand
Strand 2	G	24	26	anti-parallel

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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	40	44	first strand
Strand 2	G	49	53	anti-parallel

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There are 2 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	88	89	first strand
Strand 2	G	160	161	anti-parallel

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There are 3 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	95	98	first strand
Strand 2	G	101	104	anti-parallel
Strand 3	G	112	115	anti-parallel

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There are 2 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	121	123	first strand
Strand 2	G	131	133	anti-parallel

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There are 3 strands in AX sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	20	first strand
Strand 2	H	2	5	anti-parallel
Strand 3	H	36	38	anti-parallel

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There are 3 strands in AY sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	8	12	first strand
Strand 2	I	54	59	anti-parallel
Strand 3	I	67	70	anti-parallel

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There are 3 strands in AZ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	15	18	first strand
Strand 2	J	53	56	parallel
Strand 3	J	122	124	parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	74	76	first strand
Strand 2	J	85	87	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J8G

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J8G