Analysis of interatomic Contacts of Structural Units in PDB entry:
3JSM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JSM entry

There are 5 chains in PDB entry 3JSM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
T
 T 702 G 725
P
 C 803 G 816
P
 C 818 C 821
A
 PRO 1ALA 554
B
 SER 3GLN 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3JSM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 45Right-handed alpha
Helix 2
2
A
77 84Right-handed alpha
Helix 3
3
A
96 100Right-handed 310
Helix 4
4
A
114 118Right-handed 310
Helix 5
5
A
124 129Right-handed 310
Helix 6
6
A
155 175Right-handed alpha
Helix 7
7
A
194 212Right-handed alpha
Helix 8
8
A
254 268Right-handed alpha
Helix 9
9
A
276 282Right-handed alpha
Helix 10
10
A
296 310Right-handed alpha
Helix 11
11
A
363 384Right-handed alpha
Helix 12
12
A
394 405Right-handed alpha
Helix 13
13
A
473 483Right-handed alpha
Helix 14
14
A
483 488Right-handed alpha
Helix 15
15
A
500 508Right-handed alpha
Helix 16
16
A
515 528Right-handed alpha
Helix 17
17
A
544 554Right-handed alpha
Helix 18
18
B
27 43Right-handed alpha
Helix 19
19
B
77 82Right-handed alpha
Helix 20
20
B
85 89Right-handed 310
Helix 21
21
B
98 103Right-handed alpha
Helix 22
22
B
112 118Right-handed 310
Helix 23
23
B
121 126Right-handed alpha
Helix 24
24
B
134 138Right-handed 310
Helix 25
25
B
154 174Right-handed alpha
Helix 26
26
B
194 211Right-handed alpha
Helix 27
27
B
253 267Right-handed alpha
Helix 28
28
B
276 281Right-handed alpha
Helix 29
29
B
298 306Right-handed alpha
Helix 30
30
B
363 384Right-handed alpha
Helix 31
31
B
394 402Right-handed alpha
Helix 32
32
B
403 405Right-handed 310
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There are 13 sheets in PDB entry 3JSM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
142 146anti-parallel
Strand 3
A
130 132anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 64first strand
Strand 2
A
71 75anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 110first strand
Strand 2
A
186 191anti-parallel
Strand 3
A
179 183anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 229first strand
Strand 2
A
232 234anti-parallel
Strand 3
A
239 241anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
292 293anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 354first strand
Strand 2
A
336 344anti-parallel
Strand 3
A
326 333anti-parallel
Strand 4
A
388 391parallel
Strand 5
A
414 416parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 362first strand
Strand 2
A
512 513anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 467first strand
Strand 2
A
453 458anti-parallel
Strand 3
A
439 446anti-parallel
Strand 4
A
492 497parallel
Strand 5
A
530 535parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
72 75anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 183first strand
Strand 2
B
186 190anti-parallel
Strand 3
B
106 110anti-parallel
Strand 4
B
233 234anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 132first strand
Strand 2
B
142 144anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 331first strand
Strand 2
B
337 342anti-parallel
Strand 3
B
348 354anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
388 391first strand
Strand 2
B
413 416parallel
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