Analysis of interatomic Contacts of Structural Units in PDB entry:
3JUE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JUE entry

There are 2 chains in PDB entry 3JUE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 404MET 697
B
VAL 404GLU 701
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 3JUE. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
406 413Right-handed alpha
Helix 2
2
A
440 451Right-handed alpha
Helix 3
3
A
466 476Right-handed alpha
Helix 4
4
A
477 486Right-handed alpha
Helix 5
5
A
502 515Right-handed alpha
Helix 6
6
A
570 579Right-handed alpha
Helix 7
7
A
584 594Right-handed alpha
Helix 8
8
A
609 617Right-handed alpha
Helix 9
9
A
619 629Right-handed alpha
Helix 10
10
A
642 651Right-handed alpha
Helix 11
11
A
652 662Right-handed alpha
Helix 12
12
A
675 683Right-handed alpha
Helix 13
13
A
685 697Right-handed alpha
Helix 14
14
B
405 413Right-handed alpha
Helix 15
15
B
440 451Right-handed alpha
Helix 16
16
B
466 476Right-handed alpha
Helix 17
17
B
477 486Right-handed alpha
Helix 18
18
B
488 493Right-handed alpha
Helix 19
19
B
502 515Right-handed alpha
Helix 20
20
B
570 580Right-handed alpha
Helix 21
21
B
584 594Right-handed alpha
Helix 22
22
B
609 617Right-handed alpha
Helix 23
23
B
619 629Right-handed alpha
Helix 24
24
B
642 650Right-handed alpha
Helix 25
25
B
652 662Right-handed alpha
Helix 26
26
B
675 683Right-handed alpha
Helix 27
27
B
685 700Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3JUE. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
437 439first strand
Strand 2
A
430 432anti-parallel
Strand 3
A
457 459anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
437 439first strand
Strand 2
B
430 432anti-parallel
Strand 3
B
457 459anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il