Analysis of interatomic Contacts of Structural Units in PDB entry:
3K0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3K0J entry

There are 6 chains in PDB entry 3K0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 206MET 297
B
THR 306MET 397
C
PRO 404THR 489
D
THR 506THR 589
E
G 4 C 90
F
G 104 C 190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3K0J. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
222 235Right-handed alpha
Helix 2
2
A
236 238Right-handed 310
Helix 3
3
A
248 252Right-handed 310
Helix 4
4
A
261 273Right-handed alpha
Helix 5
5
A
291 296Right-handed alpha
Helix 6
6
B
324 335Right-handed alpha
Helix 7
7
B
361 371Right-handed alpha
Helix 8
8
B
391 396Right-handed alpha
Helix 9
9
C
422 435Right-handed alpha
Helix 10
10
C
461 473Right-handed alpha
Helix 11
11
D
522 536Right-handed alpha
Helix 12
12
D
561 573Right-handed alpha
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There are 7 sheets in PDB entry 3K0J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
240 246first strand
Strand 2
A
254 259anti-parallel
Strand 3
A
211 215anti-parallel
Strand 4
A
283 286anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
276 277first strand
Strand 2
A
280 281anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
311 314first strand
Strand 2
B
355 359anti-parallel
Strand 3
B
340 345anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
376 377first strand
Strand 2
B
380 381anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
440 445first strand
Strand 2
C
455 459anti-parallel
Strand 3
C
411 415anti-parallel
Strand 4
C
483 486anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
540 544first strand
Strand 2
D
554 559anti-parallel
Strand 3
D
511 515anti-parallel
Strand 4
D
583 586anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
576 577first strand
Strand 2
D
580 581anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il