Analysis of interatomic Contacts of Structural Units in PDB entry:
3K0K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3K0K entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 2 chains in PDB entry 3K0K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 1649PRO 1859
B
 PRO 2PHE 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3K0K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1658 1673Right-handed alpha
Helix 2
2
A
1700 1709Right-handed alpha
Helix 3
3
A
1716 1724Right-handed alpha
Helix 4
4
A
1730 1735Right-handed 310
Helix 5
5
A
1747 1754Right-handed alpha
Helix 6
6
A
1776 1787Right-handed alpha
Helix 7
7
A
1794 1798Right-handed 310
Helix 8
8
A
1811 1815Right-handed 310
Helix 9
9
A
1835 1845Right-handed alpha
Helix 10
10
A
1849 1853Right-handed 310
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There are 3 sheets in PDB entry 3K0K. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1675 1676first strand
Strand 2
A
1651 1655parallel
Strand 3
A
1686 1689parallel
Strand 4
A
1712 1715parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1696 1697first strand
Strand 2
A
1738 1739parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1790 1791first strand
Strand 2
A
1764 1768parallel
Strand 3
A
1805 1810parallel
Strand 4
A
1832 1834parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il