Analysis of interatomic Contacts of Structural Units in PDB entry:
3KBU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KBU entry

There are 4 chains in PDB entry 3KBU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 1584LEU 1889
B
GLN 1587ALA 1893
C
THR 911ARG 1068
D
ALA 910ARG 1068
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 3KBU. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
1584 1606Right-handed alpha
Helix 2
2
A
1615 1653Right-handed alpha
Helix 3
3
A
1657 1714Right-handed alpha
Helix 4
4
A
1721 1761Right-handed alpha
Helix 5
5
A
1764 1819Right-handed alpha
Helix 6
6
A
1841 1864Right-handed alpha
Helix 7
7
A
1867 1889Right-handed alpha
Helix 8
8
B
1587 1606Right-handed alpha
Helix 9
9
B
1615 1653Right-handed alpha
Helix 10
10
B
1657 1714Right-handed alpha
Helix 11
11
B
1721 1761Right-handed alpha
Helix 12
12
B
1764 1820Right-handed alpha
Helix 13
13
B
1839 1866Right-handed alpha
Helix 14
14
B
1867 1893Right-handed alpha
Helix 15
15
C
955 959Right-handed 310
Helix 16
16
C
1025 1027Right-handed 310
Helix 17
17
C
1028 1033Right-handed alpha
Helix 18
18
C
1042 1050Right-handed alpha
Helix 19
19
D
955 959Right-handed 310
Helix 20
20
D
1025 1027Right-handed 310
Helix 21
21
D
1028 1033Right-handed alpha
Helix 22
22
D
1042 1050Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3KBU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
912 913first strand
Strand 2
C
924 928parallel
Strand 3
C
935 938anti-parallel
Strand 4
C
984 994anti-parallel
Strand 5
C
1051 1058anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
916 919first strand
Strand 2
C
947 954anti-parallel
Strand 3
C
975 979anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
970 971first strand
Strand 2
C
1062 1068anti-parallel
Strand 3
C
1005 1011anti-parallel
Strand 4
C
1018 1019anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
911 913first strand
Strand 2
D
924 928parallel
Strand 3
D
935 938anti-parallel
Strand 4
D
984 994anti-parallel
Strand 5
D
1051 1058anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
916 919first strand
Strand 2
D
947 954anti-parallel
Strand 3
D
975 979anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
970 971first strand
Strand 2
D
1062 1068anti-parallel
Strand 3
D
1005 1011anti-parallel
Strand 4
D
1018 1019anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il