Analysis of interatomic Contacts of Structural Units in PDB entry:
3KDU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KDU entry

There are 2 chains in PDB entry 3KDU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 198TYR 468
B
 SER 193TYR 468
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 3KDU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
200 218Right-handed alpha
Helix 2
2
A
221 230Right-handed alpha
Helix 3
3
A
243 254Right-handed alpha
Helix 4
4
A
267 293Right-handed alpha
Helix 5
5
A
296 300Right-handed 310
Helix 6
6
A
301 322Right-handed alpha
Helix 7
7
A
333 335Right-handed 310
Helix 8
8
A
341 346Right-handed alpha
Helix 9
9
A
350 354Right-handed 310
Helix 10
10
A
355 367Right-handed alpha
Helix 11
11
A
371 384Right-handed alpha
Helix 12
12
A
393 416Right-handed alpha
Helix 13
13
A
421 451Right-handed alpha
Helix 14
14
A
457 465Right-handed alpha
Helix 15
15
B
197 218Right-handed alpha
Helix 16
16
B
221 230Right-handed alpha
Helix 17
17
B
243 254Right-handed alpha
Helix 18
18
B
267 293Right-handed alpha
Helix 19
19
B
296 300Right-handed 310
Helix 20
20
B
301 322Right-handed alpha
Helix 21
21
B
333 335Right-handed 310
Helix 22
22
B
341 346Right-handed alpha
Helix 23
23
B
350 354Right-handed 310
Helix 24
24
B
355 367Right-handed alpha
Helix 25
25
B
371 384Right-handed alpha
Helix 26
26
B
393 416Right-handed alpha
Helix 27
27
B
421 451Right-handed alpha
Helix 28
28
B
457 465Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3KDU. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 241first strand
Strand 2
A
337 340parallel
Strand 3
A
329 332anti-parallel
Strand 4
A
325 326anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 241first strand
Strand 2
B
337 340parallel
Strand 3
B
329 332anti-parallel
Strand 4
B
325 326anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il