Analysis of interatomic Contacts of Structural Units in PDB entry:
3KHU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KHU entry

There are 6 chains in PDB entry 3KHU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 0VAL 466
B
SER 0VAL 466
C
SER 0VAL 466
D
SER 0VAL 466
E
MET 1VAL 466
F
SER 0VAL 466
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are120 helices in PDB entry 3KHU. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
15 27Right-handed alpha
Helix 2
2
A
38 46Right-handed alpha
Helix 3
3
A
56 65Right-handed alpha
Helix 4
4
A
74 82Right-handed alpha
Helix 5
5
A
106 119Right-handed alpha
Helix 6
6
A
135 147Right-handed alpha
Helix 7
7
A
167 174Right-handed alpha
Helix 8
8
A
185 200Right-handed alpha
Helix 9
9
A
204 206Right-handed 310
Helix 10
10
A
212 245Right-handed alpha
Helix 11
11
A
247 257Right-handed alpha
Helix 12
12
A
276 291Right-handed alpha
Helix 13
13
A
293 322Right-handed alpha
Helix 14
14
A
348 359Right-handed alpha
Helix 15
15
A
372 380Right-handed alpha
Helix 16
16
A
388 394Right-handed alpha
Helix 17
17
A
400 406Right-handed alpha
Helix 18
18
A
417 423Right-handed 310
Helix 19
19
A
424 432Right-handed alpha
Helix 20
20
A
448 456Right-handed alpha
Helix 21
21
B
15 27Right-handed alpha
Helix 22
22
B
38 46Right-handed alpha
Helix 23
23
B
56 65Right-handed alpha
Helix 24
24
B
74 82Right-handed alpha
Helix 25
25
B
106 119Right-handed alpha
Helix 26
26
B
135 147Right-handed alpha
Helix 27
27
B
167 174Right-handed alpha
Helix 28
28
B
185 200Right-handed alpha
Helix 29
29
B
204 206Right-handed 310
Helix 30
30
B
212 245Right-handed alpha
Helix 31
31
B
247 257Right-handed alpha
Helix 32
32
B
276 291Right-handed alpha
Helix 33
33
B
293 322Right-handed alpha
Helix 34
34
B
348 360Right-handed alpha
Helix 35
35
B
372 380Right-handed alpha
Helix 36
36
B
388 394Right-handed alpha
Helix 37
37
B
400 406Right-handed alpha
Helix 38
38
B
417 423Right-handed 310
Helix 39
39
B
424 432Right-handed alpha
Helix 40
40
B
448 456Right-handed alpha
Helix 41
41
C
15 27Right-handed alpha
Helix 42
42
C
38 46Right-handed alpha
Helix 43
43
C
56 63Right-handed alpha
Helix 44
44
C
74 82Right-handed alpha
Helix 45
45
C
106 119Right-handed alpha
Helix 46
46
C
135 147Right-handed alpha
Helix 47
47
C
167 174Right-handed alpha
Helix 48
48
C
185 200Right-handed alpha
Helix 49
49
C
204 206Right-handed 310
Helix 50
50
C
212 245Right-handed alpha
Helix 51
51
C
247 257Right-handed alpha
Helix 52
52
C
276 291Right-handed alpha
Helix 53
53
C
293 322Right-handed alpha
Helix 54
54
C
348 359Right-handed alpha
Helix 55
55
C
372 380Right-handed alpha
Helix 56
56
C
388 394Right-handed alpha
Helix 57
57
C
400 406Right-handed alpha
Helix 58
58
C
417 423Right-handed 310
Helix 59
59
C
424 432Right-handed alpha
Helix 60
60
C
448 456Right-handed alpha
Helix 61
61
D
15 27Right-handed alpha
Helix 62
62
D
38 46Right-handed alpha
Helix 63
63
D
56 65Right-handed alpha
Helix 64
64
D
74 82Right-handed alpha
Helix 65
65
D
106 119Right-handed alpha
Helix 66
66
D
135 147Right-handed alpha
Helix 67
67
D
167 174Right-handed alpha
Helix 68
68
D
185 200Right-handed alpha
Helix 69
69
D
204 206Right-handed 310
Helix 70
70
D
212 245Right-handed alpha
Helix 71
71
D
247 257Right-handed alpha
Helix 72
72
D
276 291Right-handed alpha
Helix 73
73
D
293 322Right-handed alpha
Helix 74
74
D
348 359Right-handed alpha
Helix 75
75
D
372 380Right-handed alpha
Helix 76
76
D
388 394Right-handed alpha
Helix 77
77
D
400 406Right-handed alpha
Helix 78
78
D
417 423Right-handed 310
Helix 79
79
D
424 432Right-handed alpha
Helix 80
80
D
448 456Right-handed alpha
Helix 81
81
E
15 27Right-handed alpha
Helix 82
82
E
38 46Right-handed alpha
Helix 83
83
E
56 63Right-handed alpha
Helix 84
84
E
74 82Right-handed alpha
Helix 85
85
E
106 119Right-handed alpha
Helix 86
86
E
135 147Right-handed alpha
Helix 87
87
E
167 174Right-handed alpha
Helix 88
88
E
185 200Right-handed alpha
Helix 89
89
E
204 206Right-handed 310
Helix 90
90
E
212 245Right-handed alpha
Helix 91
91
E
247 257Right-handed alpha
Helix 92
92
E
276 291Right-handed alpha
Helix 93
93
E
293 322Right-handed alpha
Helix 94
94
E
348 360Right-handed alpha
Helix 95
95
E
372 380Right-handed alpha
Helix 96
96
E
388 394Right-handed alpha
Helix 97
97
E
400 406Right-handed alpha
Helix 98
98
E
417 423Right-handed 310
Helix 99
99
E
424 432Right-handed alpha
Helix 100
100
E
448 456Right-handed alpha
Helix 101
101
F
15 27Right-handed alpha
Helix 102
102
F
38 46Right-handed alpha
Helix 103
103
F
56 63Right-handed alpha
Helix 104
104
F
74 82Right-handed alpha
Helix 105
105
F
106 119Right-handed alpha
Helix 106
106
F
135 147Right-handed alpha
Helix 107
107
F
167 174Right-handed alpha
Helix 108
108
F
185 200Right-handed alpha
Helix 109
109
F
204 206Right-handed 310
Helix 110
110
F
212 245Right-handed alpha
Helix 111
111
F
247 257Right-handed alpha
Helix 112
112
F
276 291Right-handed alpha
Helix 113
113
F
293 322Right-handed alpha
Helix 114
114
F
348 360Right-handed alpha
Helix 115
115
F
372 380Right-handed alpha
Helix 116
116
F
389 394Right-handed alpha
Helix 117
117
F
400 406Right-handed alpha
Helix 118
118
F
417 423Right-handed 310
Helix 119
119
F
424 432Right-handed alpha
Helix 120
120
F
448 456Right-handed alpha
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There are 18 sheets in PDB entry 3KHU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
69 72first strand
Strand 2
A
31 35parallel
Strand 3
A
6 10parallel
Strand 4
A
84 87parallel
Strand 5
A
123 128parallel
Strand 6
A
153 158parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
178 181first strand
Strand 2
A
208 211parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
395 397first strand
Strand 2
A
363 367parallel
Strand 3
A
330 334parallel
Strand 4
A
410 413parallel
Strand 5
A
437 440parallel
Strand 6
A
458 461parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
69 72first strand
Strand 2
B
31 35parallel
Strand 3
B
6 10parallel
Strand 4
B
84 87parallel
Strand 5
B
123 128parallel
Strand 6
B
153 158parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
178 181first strand
Strand 2
B
208 211parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
395 397first strand
Strand 2
B
363 367parallel
Strand 3
B
330 334parallel
Strand 4
B
410 413parallel
Strand 5
B
437 440parallel
Strand 6
B
458 461parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
69 72first strand
Strand 2
C
31 35parallel
Strand 3
C
6 10parallel
Strand 4
C
84 87parallel
Strand 5
C
123 128parallel
Strand 6
C
153 158parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
178 181first strand
Strand 2
C
208 211parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
395 397first strand
Strand 2
C
363 367parallel
Strand 3
C
330 334parallel
Strand 4
C
410 413parallel
Strand 5
C
437 440parallel
Strand 6
C
458 461parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
69 72first strand
Strand 2
D
31 35parallel
Strand 3
D
6 10parallel
Strand 4
D
84 87parallel
Strand 5
D
123 128parallel
Strand 6
D
153 158parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
178 181first strand
Strand 2
D
208 211parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
395 397first strand
Strand 2
D
363 367parallel
Strand 3
D
330 334parallel
Strand 4
D
410 413parallel
Strand 5
D
437 440parallel
Strand 6
D
458 461parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
69 72first strand
Strand 2
E
31 35parallel
Strand 3
E
6 10parallel
Strand 4
E
84 87parallel
Strand 5
E
123 128parallel
Strand 6
E
153 158parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
178 181first strand
Strand 2
E
208 211parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
395 397first strand
Strand 2
E
363 367parallel
Strand 3
E
330 334parallel
Strand 4
E
410 413parallel
Strand 5
E
437 440parallel
Strand 6
E
458 461parallel
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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
69 72first strand
Strand 2
F
31 35parallel
Strand 3
F
6 10parallel
Strand 4
F
84 87parallel
Strand 5
F
123 128parallel
Strand 6
F
153 158parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
178 181first strand
Strand 2
F
208 211parallel
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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
395 397first strand
Strand 2
F
363 367parallel
Strand 3
F
330 334parallel
Strand 4
F
410 413parallel
Strand 5
F
437 440parallel
Strand 6
F
458 461parallel
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