Analysis of interatomic Contacts of Structural Units in PDB entry:
3L3L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3L3L entry

There is 1 chain in PDB entry 3L3L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1THR 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 3L3L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 16Right-handed alpha
Helix 2
2
A
17 27Right-handed alpha
Helix 3
3
A
36 40Right-handed 310
Helix 4
4
A
41 62Right-handed alpha
Helix 5
5
A
66 79Right-handed alpha
Helix 6
6
A
93 118Right-handed alpha
Helix 7
7
A
127 136Right-handed alpha
Helix 8
8
A
147 160Right-handed alpha
Helix 9
9
A
187 192Right-handed alpha
Helix 10
10
A
204 206Right-handed 310
Helix 11
11
A
207 215Right-handed alpha
Helix 12
12
A
239 244Right-handed alpha
Helix 13
13
A
245 247Right-handed 310
Helix 14
14
A
297 300Right-handed 310
Helix 15
15
A
332 334Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 3L3L. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 142first strand
Strand 2
A
168 180anti-parallel
Strand 3
A
336 348anti-parallel
Strand 4
A
255 264anti-parallel
Strand 5
A
196 203anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 236first strand
Strand 2
A
327 330anti-parallel
Strand 3
A
286 289anti-parallel
Strand 4
A
268 271parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 315first strand
Strand 2
A
291 295anti-parallel
Strand 3
A
323 325parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il