Analysis of interatomic Contacts of Structural Units in PDB entry:
3L9J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3L9J entry

There are 2 chains in PDB entry 3L9J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
LEU 46ILE 180
T
SER 9LEU 157
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 4 helices in PDB entry 3L9J. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
C
69 80Right-handed alpha
Helix 2
2
C
89 104Right-handed alpha
Helix 3
3
C
138 143Right-handed alpha
Helix 4
4
T
138 142Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 3L9J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
49 51first strand
Strand 2
C
58 68anti-parallel
Strand 3
C
172 180anti-parallel
Strand 4
C
83 84anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
109 111first strand
Strand 2
C
152 156anti-parallel
Strand 3
C
163 166anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
114 115first strand
Strand 2
C
124 125anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
28 29first strand
Strand 2
T
13 18anti-parallel
Strand 3
T
36 38anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
28 29first strand
Strand 2
T
13 18anti-parallel
Strand 3
T
151 156anti-parallel
Strand 4
T
54 67anti-parallel
Strand 5
T
113 126anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
42 44first strand
Strand 2
T
47 49anti-parallel
Strand 3
T
131 136anti-parallel
Strand 4
T
76 83anti-parallel
Strand 5
T
90 98anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il