Analysis of interatomic Contacts of Structural Units in PDB entry:
3LIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LIJ entry

There is 1 chain in PDB entry 3LIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 38ASN 516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3LIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 43Right-handed 310
Helix 2
2
A
46 51Right-handed 310
Helix 3
3
A
57 61Right-handed alpha
Helix 4
4
A
103 114Right-handed alpha
Helix 5
5
A
145 154Right-handed alpha
Helix 6
6
A
157 178Right-handed alpha
Helix 7
7
A
229 234Right-handed alpha
Helix 8
8
A
239 256Right-handed alpha
Helix 9
9
A
264 275Right-handed alpha
Helix 10
10
A
281 285Right-handed 310
Helix 11
11
A
288 299Right-handed alpha
Helix 12
12
A
308 314Right-handed alpha
Helix 13
13
A
315 327Right-handed alpha
Helix 14
14
A
336 343Right-handed alpha
Helix 15
15
A
348 362Right-handed alpha
Helix 16
16
A
364 379Right-handed alpha
Helix 17
17
A
387 394Right-handed alpha
Helix 18
18
A
395 400Right-handed alpha
Helix 19
19
A
409 423Right-handed alpha
Helix 20
20
A
432 440Right-handed alpha
Helix 21
21
A
441 446Right-handed alpha
Helix 22
22
A
447 459Right-handed alpha
Helix 23
23
A
467 475Right-handed alpha
Helix 24
24
A
482 491Right-handed alpha
Helix 25
25
A
502 513Right-handed alpha
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There are 5 sheets in PDB entry 3LIJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 69first strand
Strand 2
A
75 81anti-parallel
Strand 3
A
87 94anti-parallel
Strand 4
A
133 139anti-parallel
Strand 5
A
124 129anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
210 211anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 192first strand
Strand 2
A
201 203anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 386first strand
Strand 2
A
430 431anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 466first strand
Strand 2
A
500 501anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il