Analysis of interatomic Contacts of Structural Units in PDB entry:
3LLI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LLI entry

There is 1 chain in PDB entry 3LLI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 294PHE 544
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3LLI. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
301 314Right-handed alpha
Helix 2
2
A
315 319Right-handed 310
Helix 3
3
A
324 341Right-handed alpha
Helix 4
4
A
344 361Right-handed alpha
Helix 5
5
A
368 378Right-handed alpha
Helix 6
6
A
379 384Right-handed alpha
Helix 7
7
A
402 420Right-handed alpha
Helix 8
8
A
425 432Right-handed alpha
Helix 9
9
A
434 446Right-handed alpha
Helix 10
10
A
449 464Right-handed alpha
Helix 11
11
A
465 467Right-handed 310
Helix 12
12
A
469 489Right-handed alpha
Helix 13
13
A
509 513Right-handed 310
Helix 14
14
A
523 535Right-handed alpha
Helix 15
15
A
536 538Right-handed 310
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There are 2 sheets in PDB entry 3LLI. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
299 300first strand
Strand 2
A
540 541parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
321 323first strand
Strand 2
A
365 367anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il