Analysis of interatomic Contacts of Structural Units in PDB entry:
3LLM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LLM entry

There are 2 chains in PDB entry 3LLM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 329VAL 563
B
 VAL 329VAL 563
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 3LLM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
356 375Right-handed alpha
Helix 2
2
A
375 387Right-handed alpha
Helix 3
3
A
388 392Right-handed 310
Helix 4
4
A
393 404Right-handed alpha
Helix 5
5
A
416 432Right-handed alpha
Helix 6
6
A
434 437Right-handed 310
Helix 7
7
A
446 460Right-handed alpha
Helix 8
8
A
491 501Right-handed alpha
Helix 9
9
A
517 534Right-handed alpha
Helix 10
10
A
548 555Right-handed alpha
Helix 11
11
B
350 354Right-handed 310
Helix 12
12
B
356 375Right-handed alpha
Helix 13
13
B
375 387Right-handed alpha
Helix 14
14
B
388 392Right-handed 310
Helix 15
15
B
393 404Right-handed alpha
Helix 16
16
B
416 432Right-handed alpha
Helix 17
17
B
434 437Right-handed 310
Helix 18
18
B
446 460Right-handed alpha
Helix 19
19
B
491 501Right-handed alpha
Helix 20
20
B
517 534Right-handed alpha
Helix 21
21
B
548 555Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3LLM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 340first strand
Strand 2
A
345 346anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 478first strand
Strand 2
A
469 473anti-parallel
Strand 3
A
485 490parallel
Strand 4
A
439 444parallel
Strand 5
A
507 510parallel
Strand 6
A
538 543parallel
Strand 7
A
406 410parallel
Strand 8
A
561 562parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 340first strand
Strand 2
B
345 346anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
476 478first strand
Strand 2
B
469 473anti-parallel
Strand 3
B
485 490parallel
Strand 4
B
439 444parallel
Strand 5
B
507 510parallel
Strand 6
B
538 543parallel
Strand 7
B
406 410parallel
Strand 8
B
560 562parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il