Analysis of interatomic Contacts of Structural Units in PDB entry:
3M85

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3M85 entry

There are 12 chains in PDB entry 3M85 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	TRP 179
B	MET 1	TRP 179
C	MET 1	TRP 179
D	PRO 8	GLU 250
E	GLU 6	GLU 250
F	PRO 8	GLU 253
G	MET 1	GLU 258
H	MET 1	GLU 258
I	MET 1	ILE 259
X	C 3	C 6
Y	C 3	C 6
Z	C 3	C 6

There are 40 helices in PDB entry 3M85. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	97	101	Right-handed alpha
Helix 2	2	A	107	111	Right-handed 310
Helix 3	3	C	107	111	Right-handed 310
Helix 4	4	D	83	86	Right-handed 310
Helix 5	5	D	95	113	Right-handed alpha
Helix 6	6	D	114	118	Right-handed 310
Helix 7	7	D	135	151	Right-handed alpha
Helix 8	8	D	176	182	Right-handed alpha
Helix 9	9	D	211	250	Right-handed alpha
Helix 10	10	E	83	86	Right-handed 310
Helix 11	11	E	95	113	Right-handed alpha
Helix 12	12	E	114	118	Right-handed 310
Helix 13	13	E	135	151	Right-handed alpha
Helix 14	14	E	176	182	Right-handed alpha
Helix 15	15	E	211	247	Right-handed alpha
Helix 16	16	F	83	86	Right-handed 310
Helix 17	17	F	95	111	Right-handed alpha
Helix 18	18	F	114	118	Right-handed 310
Helix 19	19	F	135	151	Right-handed alpha
Helix 20	20	F	176	182	Right-handed alpha
Helix 21	21	F	211	252	Right-handed alpha
Helix 22	22	G	2	19	Right-handed alpha
Helix 23	23	G	99	117	Right-handed alpha
Helix 24	24	G	147	162	Right-handed alpha
Helix 25	25	G	167	171	Right-handed 310
Helix 26	26	G	203	208	Right-handed 310
Helix 27	27	G	235	255	Right-handed alpha
Helix 28	28	H	4	20	Right-handed alpha
Helix 29	29	H	99	116	Right-handed alpha
Helix 30	30	H	120	124	Right-handed 310
Helix 31	31	H	147	162	Right-handed alpha
Helix 32	32	H	167	171	Right-handed 310
Helix 33	33	H	203	208	Right-handed 310
Helix 34	34	H	234	254	Right-handed alpha
Helix 35	35	I	1	20	Right-handed alpha
Helix 36	36	I	99	116	Right-handed alpha
Helix 37	37	I	120	123	Right-handed 310
Helix 38	38	I	147	161	Right-handed alpha
Helix 39	39	I	201	206	Right-handed alpha
Helix 40	40	I	234	255	Right-handed alpha

There are 28 sheets in PDB entry 3M85. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	A	43	48	anti-parallel
Strand 4	A	17	18	parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	28	31	anti-parallel
Strand 3	A	22	24	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	96	first strand
Strand 2	A	72	80	anti-parallel
Strand 3	A	60	68	anti-parallel
Strand 4	A	117	122	anti-parallel
Strand 5	A	129	130	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	96	first strand
Strand 2	A	72	80	anti-parallel
Strand 3	A	60	68	anti-parallel
Strand 4	A	117	122	anti-parallel
Strand 5	A	137	140	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	153	first strand
Strand 2	A	156	158	anti-parallel
Strand 3	A	165	166	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	35	40	anti-parallel
Strand 3	B	43	48	anti-parallel
Strand 4	B	17	18	parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	28	31	anti-parallel
Strand 3	B	22	25	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	96	first strand
Strand 2	B	72	80	anti-parallel
Strand 3	B	61	68	anti-parallel
Strand 4	B	117	119	anti-parallel
Strand 5	B	137	140	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	122	first strand
Strand 2	B	129	130	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	153	first strand
Strand 2	B	156	158	anti-parallel
Strand 3	B	165	166	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	4	first strand
Strand 2	C	35	40	anti-parallel
Strand 3	C	43	48	anti-parallel
Strand 4	C	17	18	parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	28	31	anti-parallel
Strand 3	C	22	25	anti-parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	140	first strand
Strand 2	C	117	124	anti-parallel
Strand 3	C	128	130	anti-parallel
Strand 4	C	92	96	parallel
Strand 5	C	72	80	anti-parallel
Strand 6	C	60	68	anti-parallel
Strand 7	C	117	124	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	153	first strand
Strand 2	C	156	158	anti-parallel
Strand 3	C	165	166	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	33	first strand
Strand 2	D	41	47	anti-parallel
Strand 3	D	50	61	anti-parallel
Strand 4	D	121	131	anti-parallel
Strand 5	D	73	81	parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	160	first strand
Strand 2	D	186	194	anti-parallel
Strand 3	D	163	167	anti-parallel
Strand 4	D	170	173	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	160	first strand
Strand 2	D	186	194	anti-parallel
Strand 3	D	197	204	anti-parallel
Strand 4	G	233	234	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	33	first strand
Strand 2	E	41	47	anti-parallel
Strand 3	E	50	60	anti-parallel
Strand 4	E	122	131	anti-parallel
Strand 5	E	74	81	parallel

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There are 8 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	170	173	first strand
Strand 2	E	158	167	anti-parallel
Strand 3	E	185	194	anti-parallel
Strand 4	E	197	210	anti-parallel
Strand 5	H	222	228	anti-parallel
Strand 6	H	211	216	anti-parallel
Strand 7	H	185	192	anti-parallel
Strand 8	H	195	198	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	13	first strand
Strand 2	F	16	17	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	33	first strand
Strand 2	F	41	47	anti-parallel
Strand 3	F	50	60	anti-parallel
Strand 4	F	122	131	anti-parallel
Strand 5	F	74	81	parallel

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There are 8 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	170	173	first strand
Strand 2	F	158	167	anti-parallel
Strand 3	F	185	194	anti-parallel
Strand 4	F	197	210	anti-parallel
Strand 5	I	222	228	anti-parallel
Strand 6	I	211	216	anti-parallel
Strand 7	I	185	192	anti-parallel
Strand 8	I	195	198	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	35	39	first strand
Strand 2	G	47	53	anti-parallel
Strand 3	G	56	67	anti-parallel
Strand 4	G	132	143	anti-parallel
Strand 5	G	78	84	parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	164	165	first strand
Strand 2	G	176	177	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	195	197	first strand
Strand 2	G	185	192	anti-parallel
Strand 3	G	211	216	anti-parallel
Strand 4	G	222	228	anti-parallel

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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	39	first strand
Strand 2	H	47	53	anti-parallel
Strand 3	H	56	67	anti-parallel
Strand 4	H	132	143	anti-parallel
Strand 5	H	78	84	parallel

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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	35	39	first strand
Strand 2	I	47	53	anti-parallel
Strand 3	I	56	67	anti-parallel
Strand 4	I	131	143	anti-parallel
Strand 5	I	78	84	parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	35	39	first strand
Strand 2	I	47	53	anti-parallel
Strand 3	I	56	67	anti-parallel
Strand 4	I	131	143	anti-parallel
Strand 5	I	125	127	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3M85

Analysis of interatomic Contacts of Structural Units in PDB entry:
3M85