Analysis of interatomic Contacts of Structural Units in PDB entry:
3MJG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3MJG entry

There are 4 chains in PDB entry 3MJG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 6	VAL 102
B	LEU 2	VAL 102
X	LEU 33	GLU 312
Y	VAL 34	GLU 312

There are 6 helices in PDB entry 3MJG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	26	30	Right-handed 310
Helix 2	2	B	26	31	Right-handed alpha
Helix 3	3	X	91	95	Right-handed 310
Helix 4	4	X	131	135	Right-handed alpha
Helix 5	5	Y	91	95	Right-handed 310
Helix 6	6	Y	131	135	Right-handed alpha

There are 19 sheets in PDB entry 3MJG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	B	58	78	parallel
Strand 3	B	37	40	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	B	58	78	parallel
Strand 3	B	81	101	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	24	first strand
Strand 2	A	43	50	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	58	78	anti-parallel
Strand 3	A	81	101	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	24	first strand
Strand 2	B	43	50	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	41	43	first strand
Strand 2	X	114	119	parallel
Strand 3	X	96	101	anti-parallel
Strand 4	X	61	63	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	50	56	first strand
Strand 2	X	81	87	anti-parallel
Strand 3	X	71	75	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	136	139	first strand
Strand 2	X	204	208	parallel
Strand 3	X	187	194	anti-parallel
Strand 4	X	158	162	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	136	139	first strand
Strand 2	X	204	208	parallel
Strand 3	X	187	194	anti-parallel
Strand 4	X	197	200	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	145	147	first strand
Strand 2	X	178	181	anti-parallel
Strand 3	X	173	174	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	217	220	first strand
Strand 2	X	231	238	anti-parallel
Strand 3	X	271	278	anti-parallel
Strand 4	X	261	264	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	224	226	first strand
Strand 2	X	300	311	parallel
Strand 3	X	287	295	anti-parallel
Strand 4	X	244	248	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	41	43	first strand
Strand 2	Y	116	119	parallel
Strand 3	Y	96	100	anti-parallel
Strand 4	Y	62	63	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	50	56	first strand
Strand 2	Y	80	87	anti-parallel
Strand 3	Y	72	76	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	136	139	first strand
Strand 2	Y	204	208	parallel
Strand 3	Y	187	194	anti-parallel
Strand 4	Y	159	162	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	136	139	first strand
Strand 2	Y	204	208	parallel
Strand 3	Y	187	194	anti-parallel
Strand 4	Y	197	200	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	145	147	first strand
Strand 2	Y	178	181	anti-parallel
Strand 3	Y	173	174	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	217	220	first strand
Strand 2	Y	231	238	anti-parallel
Strand 3	Y	271	278	anti-parallel
Strand 4	Y	261	264	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	224	226	first strand
Strand 2	Y	301	311	parallel
Strand 3	Y	287	294	anti-parallel
Strand 4	Y	244	248	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3MJG

Analysis of interatomic Contacts of Structural Units in PDB entry:
3MJG