Analysis of interatomic Contacts of Structural Units in PDB entry:
3MT5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MT5 entry

There is 1 chain in PDB entry 3MT5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 343ASP 1056
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 3MT5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
352 367Right-handed alpha
Helix 2
2
A
384 389Right-handed alpha
Helix 3
3
A
390 395Right-handed alpha
Helix 4
4
A
407 414Right-handed alpha
Helix 5
5
A
415 419Right-handed 310
Helix 6
6
A
432 451Right-handed alpha
Helix 7
7
A
462 467Right-handed alpha
Helix 8
8
A
468 472Right-handed 310
Helix 9
9
A
486 500Right-handed alpha
Helix 10
10
A
502 509Right-handed alpha
Helix 11
11
A
523 533Right-handed alpha
Helix 12
12
A
542 546Right-handed 310
Helix 13
13
A
549 560Right-handed alpha
Helix 14
14
A
601 607Right-handed alpha
Helix 15
15
A
679 683Right-handed 310
Helix 16
16
A
699 703Right-handed 310
Helix 17
17
A
706 713Right-handed alpha
Helix 18
18
A
734 739Right-handed alpha
Helix 19
19
A
740 743Right-handed 310
Helix 20
20
A
747 751Right-handed 310
Helix 21
21
A
759 771Right-handed alpha
Helix 22
22
A
785 792Right-handed alpha
Helix 23
23
A
793 797Right-handed 310
Helix 24
24
A
817 829Right-handed alpha
Helix 25
25
A
874 876Right-handed 310
Helix 26
26
A
884 889Right-handed 310
Helix 27
27
A
902 905Right-handed 310
Helix 28
28
A
906 911Right-handed alpha
Helix 29
29
A
918 921Right-handed 310
Helix 30
30
A
922 930Right-handed alpha
Helix 31
31
A
930 942Right-handed alpha
Helix 32
32
A
949 957Right-handed alpha
Helix 33
33
A
965 971Right-handed alpha
Helix 34
34
A
988 992Right-handed 310
Helix 35
35
A
995 1007Right-handed alpha
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There are 6 sheets in PDB entry 3MT5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 401first strand
Strand 2
A
374 378parallel
Strand 3
A
344 349parallel
Strand 4
A
421 425parallel
Strand 5
A
456 460parallel
Strand 6
A
482 485parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
535 540first strand
Strand 2
A
594 599anti-parallel
Strand 3
A
564 569anti-parallel
Strand 4
A
580 581anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
686 687first strand
Strand 2
A
961 962anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
776 780first strand
Strand 2
A
754 758parallel
Strand 3
A
719 724parallel
Strand 4
A
799 804parallel
Strand 5
A
878 882parallel
Strand 6
A
914 916parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
831 832first strand
Strand 2
A
871 872anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
976 981first strand
Strand 2
A
1048 1053anti-parallel
Strand 3
A
1010 1017anti-parallel
Strand 4
A
1031 1035anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il