Analysis of interatomic Contacts of Structural Units in PDB entry:
3N1Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3N1Q entry

There are 6 chains in PDB entry 3N1Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
GLN 39ASP 189
C
GLY 829LYS 924
A
GLN 39ASP 189
D
GLY 829LYS 924
E
LEU 40ASP 189
F
GLY 829LYS 924
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3N1Q. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
B
72 77Right-handed 310
Helix 2
2
B
100 118Right-handed alpha
Helix 3
3
B
139 144Right-handed 310
Helix 4
4
B
155 157Right-handed 310
Helix 5
5
B
158 170Right-handed alpha
Helix 6
6
C
873 877Right-handed 310
Helix 7
7
A
71 75Right-handed 310
Helix 8
8
A
100 118Right-handed alpha
Helix 9
9
A
139 144Right-handed 310
Helix 10
10
A
155 157Right-handed 310
Helix 11
11
A
158 170Right-handed alpha
Helix 12
12
D
873 877Right-handed 310
Helix 13
13
E
100 118Right-handed alpha
Helix 14
14
E
139 144Right-handed 310
Helix 15
15
E
155 157Right-handed 310
Helix 16
16
E
158 170Right-handed alpha
Helix 17
17
F
873 877Right-handed 310
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There are 12 sheets in PDB entry 3N1Q. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
48 49first strand
Strand 2
B
173 178anti-parallel
Strand 3
B
181 185anti-parallel
Strand 4
B
146 151anti-parallel
Strand 5
B
123 127anti-parallel
Strand 6
B
86 87parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
78 79first strand
Strand 2
B
98 99anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
831 837first strand
Strand 2
C
843 848anti-parallel
Strand 3
C
888 891anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
878 883first strand
Strand 2
C
861 868anti-parallel
Strand 3
C
899 907anti-parallel
Strand 4
C
919 922anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
48 49first strand
Strand 2
A
173 175anti-parallel
Strand 3
A
182 185anti-parallel
Strand 4
A
146 151anti-parallel
Strand 5
A
123 127anti-parallel
Strand 6
A
85 87parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
78 79first strand
Strand 2
A
98 99anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
831 837first strand
Strand 2
D
843 848anti-parallel
Strand 3
D
888 891anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
878 883first strand
Strand 2
D
861 868anti-parallel
Strand 3
D
899 907anti-parallel
Strand 4
D
919 922anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
48 49first strand
Strand 2
E
173 178anti-parallel
Strand 3
E
181 185anti-parallel
Strand 4
E
146 151anti-parallel
Strand 5
E
123 127anti-parallel
Strand 6
E
85 87parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
78 79first strand
Strand 2
E
98 99anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
832 837first strand
Strand 2
F
843 847anti-parallel
Strand 3
F
888 891anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
878 881first strand
Strand 2
F
861 868anti-parallel
Strand 3
F
899 907anti-parallel
Strand 4
F
919 922anti-parallel
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