Analysis of interatomic Contacts of Structural Units in PDB entry:
3N8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3N8Y entry

There are 3 chains in PDB entry 3N8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 32ASP 584
B
 PRO 32PHE 529
B
 LEU 531ASP 584
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 61 helices in PDB entry 3N8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 39Right-handed 310
Helix 2
2
A
73 83Right-handed alpha
Helix 3
3
A
85 94Right-handed alpha
Helix 4
4
A
96 105Right-handed alpha
Helix 5
5
A
107 122Right-handed alpha
Helix 6
6
A
138 144Right-handed alpha
Helix 7
7
A
173 182Right-handed alpha
Helix 8
8
A
195 207Right-handed alpha
Helix 9
9
A
237 245Right-handed alpha
Helix 10
10
A
289 294Right-handed 310
Helix 11
11
A
295 320Right-handed alpha
Helix 12
12
A
324 347Right-handed alpha
Helix 13
13
A
347 354Right-handed alpha
Helix 14
14
A
362 367Right-handed 310
Helix 15
15
A
378 385Right-handed alpha
Helix 16
16
A
387 391Right-handed 310
Helix 17
17
A
403 408Right-handed alpha
Helix 18
18
A
412 418Right-handed alpha
Helix 19
19
A
418 429Right-handed alpha
Helix 20
20
A
444 459Right-handed alpha
Helix 21
21
A
462 470Right-handed alpha
Helix 22
22
A
477 483Right-handed alpha
Helix 23
23
A
485 496Right-handed alpha
Helix 24
24
A
497 501Right-handed 310
Helix 25
25
A
502 509Right-handed alpha
Helix 26
26
A
519 535Right-handed alpha
Helix 27
27
A
537 541Right-handed 310
Helix 28
28
A
547 550Right-handed 310
Helix 29
29
A
551 561Right-handed alpha
Helix 30
30
A
563 570Right-handed alpha
Helix 31
31
B
34 39Right-handed 310
Helix 32
32
B
73 82Right-handed alpha
Helix 33
33
B
85 94Right-handed alpha
Helix 34
34
B
96 105Right-handed alpha
Helix 35
35
B
107 122Right-handed alpha
Helix 36
36
B
138 144Right-handed alpha
Helix 37
37
B
173 182Right-handed alpha
Helix 38
38
B
195 207Right-handed alpha
Helix 39
39
B
237 245Right-handed alpha
Helix 40
40
B
280 284Right-handed 310
Helix 41
41
B
291 294Right-handed 310
Helix 42
42
B
295 320Right-handed alpha
Helix 43
43
B
324 347Right-handed alpha
Helix 44
44
B
347 354Right-handed alpha
Helix 45
45
B
362 369Right-handed 310
Helix 46
46
B
378 385Right-handed alpha
Helix 47
47
B
387 391Right-handed 310
Helix 48
48
B
403 408Right-handed alpha
Helix 49
49
B
412 429Right-handed alpha
Helix 50
50
B
444 459Right-handed alpha
Helix 51
51
B
462 470Right-handed alpha
Helix 52
52
B
477 483Right-handed alpha
Helix 53
53
B
485 496Right-handed alpha
Helix 54
54
B
497 501Right-handed 310
Helix 55
55
B
502 508Right-handed alpha
Helix 56
56
B
519 536Right-handed alpha
Helix 57
57
B
537 541Right-handed 310
Helix 58
58
B
547 551Right-handed 310
Helix 59
59
B
552 561Right-handed alpha
Helix 60
60
B
563 569Right-handed alpha
Helix 61
61
B
570 572Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 3N8Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
54 58anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
71 72anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 257first strand
Strand 2
A
260 262anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 397first strand
Strand 2
A
400 402anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 50first strand
Strand 2
B
54 58anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
71 72anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 257first strand
Strand 2
B
260 262anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 397first strand
Strand 2
B
400 402anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il