Analysis of interatomic Contacts of Structural Units in PDB entry:
3NBV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NBV entry

There are 2 chains in PDB entry 3NBV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 3VAL 298
B
GLY -2VAL 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3NBV. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
41 54Right-handed alpha
Helix 2
2
A
66 79Right-handed alpha
Helix 3
3
A
121 126Right-handed alpha
Helix 4
4
A
127 128Right-handed 310
Helix 5
5
A
129 131Right-handed 310
Helix 6
6
A
142 158Right-handed alpha
Helix 7
7
A
159 160Right-handed 310
Helix 8
8
A
161 165Right-handed 310
Helix 9
9
A
176 185Right-handed 310
Helix 10
10
A
192 199Right-handed alpha
Helix 11
11
A
203 212Right-handed alpha
Helix 12
12
A
213 215Right-handed 310
Helix 13
13
A
226 228Right-handed 310
Helix 14
14
A
255 270Right-handed alpha
Helix 15
15
A
273 290Right-handed alpha
Helix 16
16
B
41 54Right-handed alpha
Helix 17
17
B
66 79Right-handed alpha
Helix 18
18
B
121 127Right-handed alpha
Helix 19
19
B
142 159Right-handed alpha
Helix 20
20
B
160 165Right-handed 310
Helix 21
21
B
176 185Right-handed 310
Helix 22
22
B
192 199Right-handed alpha
Helix 23
23
B
203 212Right-handed alpha
Helix 24
24
B
213 215Right-handed 310
Helix 25
25
B
226 228Right-handed 310
Helix 26
26
B
255 270Right-handed alpha
Helix 27
27
B
273 290Right-handed alpha
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There are 6 sheets in PDB entry 3NBV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
57 60first strand
Strand 2
A
5 9parallel
Strand 3
A
133 139parallel
Strand 4
A
167 172parallel
Strand 5
A
188 191parallel
Strand 6
A
220 224parallel
Strand 7
A
230 233anti-parallel
Strand 8
A
239 242anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
34 40first strand
Strand 2
A
13 20anti-parallel
Strand 3
A
96 102parallel
Strand 4
A
108 113anti-parallel
Strand 5
B
29 31parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
29 31first strand
Strand 2
B
108 112parallel
Strand 3
B
96 102anti-parallel
Strand 4
B
13 20parallel
Strand 5
B
34 40anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
62 63first strand
Strand 2
A
87 88parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
57 60first strand
Strand 2
B
5 9parallel
Strand 3
B
133 139parallel
Strand 4
B
167 172parallel
Strand 5
B
188 191parallel
Strand 6
B
220 224parallel
Strand 7
B
230 233anti-parallel
Strand 8
B
239 242anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
62 63first strand
Strand 2
B
87 88parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il