Analysis of interatomic Contacts of Structural Units in PDB entry:
3NJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NJ4 entry

There are 4 chains in PDB entry 3NJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 2TYR 432
B
ASP 3TYR 432
C
SER 2TYR 432
D
ASP 3TYR 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 89 helices in PDB entry 3NJ4. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
11 13Right-handed 310
Helix 2
2
A
14 27Right-handed alpha
Helix 3
3
A
29 40Right-handed alpha
Helix 4
4
A
57 70Right-handed alpha
Helix 5
5
A
85 95Right-handed alpha
Helix 6
6
A
106 116Right-handed alpha
Helix 7
7
A
133 143Right-handed alpha
Helix 8
8
A
146 150Right-handed 310
Helix 9
9
A
157 170Right-handed alpha
Helix 10
10
A
183 188Right-handed alpha
Helix 11
11
A
191 208Right-handed alpha
Helix 12
12
A
222 235Right-handed alpha
Helix 13
13
A
245 255Right-handed alpha
Helix 14
14
A
261 269Right-handed alpha
Helix 15
15
A
283 288Right-handed alpha
Helix 16
16
A
307 313Right-handed alpha
Helix 17
17
A
341 343Right-handed 310
Helix 18
18
A
344 349Right-handed alpha
Helix 19
19
A
354 375Right-handed alpha
Helix 20
20
A
376 379Right-handed 310
Helix 21
21
A
387 397Right-handed alpha
Helix 22
22
A
398 403Right-handed alpha
Helix 23
23
A
410 418Right-handed alpha
Helix 24
24
B
11 13Right-handed 310
Helix 25
25
B
14 27Right-handed alpha
Helix 26
26
B
29 40Right-handed alpha
Helix 27
27
B
57 70Right-handed alpha
Helix 28
28
B
85 95Right-handed alpha
Helix 29
29
B
106 116Right-handed alpha
Helix 30
30
B
133 143Right-handed alpha
Helix 31
31
B
144 150Right-handed 310
Helix 32
32
B
157 170Right-handed alpha
Helix 33
33
B
183 188Right-handed alpha
Helix 34
34
B
189 208Right-handed alpha
Helix 35
35
B
222 235Right-handed alpha
Helix 36
36
B
245 255Right-handed alpha
Helix 37
37
B
261 266Right-handed alpha
Helix 38
38
B
283 288Right-handed alpha
Helix 39
39
B
307 313Right-handed alpha
Helix 40
40
B
341 343Right-handed 310
Helix 41
41
B
344 349Right-handed alpha
Helix 42
42
B
354 375Right-handed alpha
Helix 43
43
B
387 398Right-handed alpha
Helix 44
44
B
398 403Right-handed alpha
Helix 45
45
B
410 418Right-handed alpha
Helix 46
46
C
11 13Right-handed 310
Helix 47
47
C
14 27Right-handed alpha
Helix 48
48
C
29 40Right-handed alpha
Helix 49
49
C
57 70Right-handed alpha
Helix 50
50
C
85 95Right-handed alpha
Helix 51
51
C
106 116Right-handed alpha
Helix 52
52
C
133 143Right-handed alpha
Helix 53
53
C
144 150Right-handed 310
Helix 54
54
C
157 170Right-handed alpha
Helix 55
55
C
183 188Right-handed alpha
Helix 56
56
C
194 208Right-handed alpha
Helix 57
57
C
222 235Right-handed alpha
Helix 58
58
C
245 255Right-handed alpha
Helix 59
59
C
261 266Right-handed alpha
Helix 60
60
C
283 290Right-handed alpha
Helix 61
61
C
307 313Right-handed alpha
Helix 62
62
C
341 343Right-handed 310
Helix 63
63
C
344 350Right-handed alpha
Helix 64
64
C
354 375Right-handed alpha
Helix 65
65
C
387 400Right-handed alpha
Helix 66
66
C
410 417Right-handed alpha
Helix 67
67
D
11 13Right-handed 310
Helix 68
68
D
14 29Right-handed alpha
Helix 69
69
D
29 40Right-handed alpha
Helix 70
70
D
57 70Right-handed alpha
Helix 71
71
D
85 95Right-handed alpha
Helix 72
72
D
106 116Right-handed alpha
Helix 73
73
D
133 143Right-handed alpha
Helix 74
74
D
144 150Right-handed 310
Helix 75
75
D
157 170Right-handed alpha
Helix 76
76
D
183 188Right-handed alpha
Helix 77
77
D
189 208Right-handed alpha
Helix 78
78
D
222 235Right-handed alpha
Helix 79
79
D
245 255Right-handed alpha
Helix 80
80
D
261 266Right-handed alpha
Helix 81
81
D
283 288Right-handed alpha
Helix 82
82
D
307 315Right-handed alpha
Helix 83
83
D
341 343Right-handed 310
Helix 84
84
D
344 349Right-handed alpha
Helix 85
85
D
354 375Right-handed alpha
Helix 86
86
D
376 379Right-handed 310
Helix 87
87
D
387 400Right-handed alpha
Helix 88
88
D
401 403Right-handed 310
Helix 89
89
D
410 418Right-handed alpha
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There are 13 sheets in PDB entry 3NJ4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
99 100first strand
Strand 2
A
73 77parallel
Strand 3
A
49 53parallel
Strand 4
A
127 129parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
119 120first strand
Strand 2
A
123 124anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
153 155first strand
Strand 2
A
177 179parallel
Strand 3
A
383 384parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
258 259first strand
Strand 2
A
238 242parallel
Strand 3
A
215 219parallel
Strand 4
A
271 274parallel
Strand 5
A
294 298parallel
Strand 6
A
335 339parallel
Strand 7
A
325 329anti-parallel
Strand 8
A
317 322anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
99 100first strand
Strand 2
B
73 77parallel
Strand 3
B
49 53parallel
Strand 4
B
127 130parallel
Strand 5
B
152 154parallel
Strand 6
B
177 178parallel
Strand 7
B
383 384parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
119 120first strand
Strand 2
B
123 124anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
258 259first strand
Strand 2
B
238 242parallel
Strand 3
B
215 219parallel
Strand 4
B
271 274parallel
Strand 5
B
294 298parallel
Strand 6
B
335 339parallel
Strand 7
B
325 329anti-parallel
Strand 8
B
317 322anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
99 100first strand
Strand 2
C
73 77parallel
Strand 3
C
49 53parallel
Strand 4
C
127 130parallel
Strand 5
C
152 155parallel
Strand 6
C
177 179parallel
Strand 7
C
383 384parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
119 120first strand
Strand 2
C
123 124anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
258 259first strand
Strand 2
C
238 242parallel
Strand 3
C
215 219parallel
Strand 4
C
271 274parallel
Strand 5
C
294 298parallel
Strand 6
C
335 339parallel
Strand 7
C
325 329anti-parallel
Strand 8
C
317 322anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
99 100first strand
Strand 2
D
73 77parallel
Strand 3
D
49 53parallel
Strand 4
D
127 130parallel
Strand 5
D
152 155parallel
Strand 6
D
177 179parallel
Strand 7
D
383 384parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
119 120first strand
Strand 2
D
123 124anti-parallel
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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
258 259first strand
Strand 2
D
238 242parallel
Strand 3
D
215 219parallel
Strand 4
D
271 274parallel
Strand 5
D
294 298parallel
Strand 6
D
335 339parallel
Strand 7
D
325 329anti-parallel
Strand 8
D
317 322anti-parallel
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