Analysis of interatomic Contacts of Structural Units in PDB entry:
3NKR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NKR entry

There is 1 chain in PDB entry 3NKR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 51GLU 855
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3NKR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
88 94Right-handed alpha
Helix 2
2
A
103 107Right-handed 310
Helix 3
3
A
122 127Right-handed alpha
Helix 4
4
A
132 139Right-handed alpha
Helix 5
5
A
142 146Right-handed 310
Helix 6
6
A
174 184Right-handed 310
Helix 7
7
A
185 195Right-handed alpha
Helix 8
8
A
208 219Right-handed alpha
Helix 9
9
A
221 226Right-handed alpha
Helix 10
10
A
246 254Right-handed 310
Helix 11
11
A
258 266Right-handed alpha
Helix 12
12
A
280 293Right-handed alpha
Helix 13
13
A
311 318Right-handed alpha
Helix 14
14
A
321 323Right-handed 310
Helix 15
15
A
324 345Right-handed alpha
Helix 16
16
A
373 375Right-handed 310
Helix 17
17
A
378 380Right-handed 310
Helix 18
18
A
403 412Right-handed alpha
Helix 19
19
A
426 428Right-handed 310
Helix 20
20
A
429 433Right-handed 310
Helix 21
21
A
480 484Right-handed 310
Helix 22
22
A
507 516Right-handed alpha
Helix 23
23
A
530 534Right-handed 310
Helix 24
24
A
558 562Right-handed 310
Helix 25
25
A
587 592Right-handed alpha
Helix 26
26
A
641 645Right-handed 310
Helix 27
27
A
661 668Right-handed alpha
Helix 28
28
A
678 682Right-handed 310
Helix 29
29
A
684 689Right-handed alpha
Helix 30
30
A
693 695Right-handed 310
Helix 31
31
A
701 714Right-handed alpha
Helix 32
32
A
714 724Right-handed alpha
Helix 33
33
A
744 748Right-handed 310
Helix 34
34
A
776 780Right-handed 310
Helix 35
35
A
806 809Right-handed 310
Helix 36
36
A
810 818Right-handed alpha
Helix 37
37
A
821 830Right-handed alpha
Helix 38
38
A
840 850Right-handed alpha
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There are 9 sheets in PDB entry 3NKR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 310first strand
Strand 2
A
165 171parallel
Strand 3
A
352 357parallel
Strand 4
A
487 490anti-parallel
Strand 5
A
196 197anti-parallel
Strand 6
A
498 499parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
503 504parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 234first strand
Strand 2
A
239 242anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 363first strand
Strand 2
A
472 473anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 371first strand
Strand 2
A
452 454parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 385first strand
Strand 2
A
389 394anti-parallel
Strand 3
A
443 447anti-parallel
Strand 4
A
420 424anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
598 599first strand
Strand 2
A
831 832anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
605 609first strand
Strand 2
A
614 618anti-parallel
Strand 3
A
623 631anti-parallel
Strand 4
A
726 733anti-parallel
Strand 5
A
762 770anti-parallel
Strand 6
A
784 792anti-parallel
Strand 7
A
819 820anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
672 675first strand
Strand 2
A
697 700anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il