Analysis of interatomic Contacts of Structural Units in PDB entry:
3NVN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NVN entry

There are 2 chains in PDB entry 3NVN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 15ILE 397
B
GLU 37PRO 510
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3NVN. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
260 270Right-handed alpha
Helix 2
2
A
295 305Right-handed alpha
Helix 3
3
B
128 133Right-handed alpha
Helix 4
4
B
197 201Right-handed 310
Helix 5
5
B
212 216Right-handed 310
Helix 6
6
B
333 340Right-handed alpha
Helix 7
7
B
460 466Right-handed alpha
Helix 8
8
B
485 487Right-handed 310
Helix 9
9
B
502 506Right-handed 310
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There are 16 sheets in PDB entry 3NVN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
17 20first strand
Strand 2
A
386 389anti-parallel
Strand 3
A
379 383anti-parallel
Strand 4
A
370 375anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
27 32first strand
Strand 2
A
37 41anti-parallel
Strand 3
A
44 49anti-parallel
Strand 4
A
52 57anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
65 70first strand
Strand 2
A
74 78anti-parallel
Strand 3
A
85 88anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
112 114first strand
Strand 2
A
119 121anti-parallel
Strand 3
A
134 135anti-parallel
Strand 4
A
144 145anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
158 164first strand
Strand 2
A
167 179anti-parallel
Strand 3
A
183 193anti-parallel
Strand 4
A
212 216anti-parallel
Strand 5
A
307 312parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
227 235first strand
Strand 2
A
240 247anti-parallel
Strand 3
A
254 259anti-parallel
Strand 4
A
320 321anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
328 333first strand
Strand 2
A
341 346anti-parallel
Strand 3
A
350 355anti-parallel
Strand 4
A
361 365anti-parallel
Strand 5
A
395 396anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
39 41first strand
Strand 2
B
446 451anti-parallel
Strand 3
B
438 443anti-parallel
Strand 4
B
430 431anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
48 51first strand
Strand 2
B
57 60anti-parallel
Strand 3
B
64 68anti-parallel
Strand 4
B
75 80anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
106 112first strand
Strand 2
B
122 127anti-parallel
Strand 3
B
134 138anti-parallel
Strand 4
B
149 150anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
162 169first strand
Strand 2
B
174 181anti-parallel
Strand 3
B
203 209anti-parallel
Strand 4
B
222 224anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
232 234first strand
Strand 2
B
243 252anti-parallel
Strand 3
B
257 258anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
238 239first strand
Strand 2
B
243 252anti-parallel
Strand 3
B
263 268anti-parallel
Strand 4
B
275 281anti-parallel
Strand 5
B
361 363parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
293 299first strand
Strand 2
B
305 311anti-parallel
Strand 3
B
326 332anti-parallel
Strand 4
B
371 373anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
376 383first strand
Strand 2
B
388 394anti-parallel
Strand 3
B
398 403anti-parallel
Strand 4
B
414 418anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
480 483first strand
Strand 2
B
472 475anti-parallel
Strand 3
B
496 497anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il