Analysis of interatomic Contacts of Structural Units in PDB entry:
3NVQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NVQ entry

There are 4 chains in PDB entry 3NVQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 46ASP 633
B
 ALA 35GLY 508
E
 GLY 46ASP 633
F
 ALA 35GLY 508
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3NVQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
234 237Right-handed 310
Helix 2
2
A
315 318Right-handed 310
Helix 3
3
A
339 349Right-handed alpha
Helix 4
4
A
374 384Right-handed alpha
Helix 5
5
A
498 506Right-handed alpha
Helix 6
6
B
128 133Right-handed alpha
Helix 7
7
B
197 201Right-handed 310
Helix 8
8
B
212 216Right-handed 310
Helix 9
9
B
301 303Right-handed 310
Helix 10
10
B
333 340Right-handed alpha
Helix 11
11
B
454 458Right-handed 310
Helix 12
12
B
460 466Right-handed alpha
Helix 13
13
E
234 237Right-handed 310
Helix 14
14
E
315 318Right-handed 310
Helix 15
15
E
339 349Right-handed alpha
Helix 16
16
E
374 384Right-handed alpha
Helix 17
17
E
498 506Right-handed alpha
Helix 18
18
E
604 608Right-handed 310
Helix 19
19
F
128 133Right-handed alpha
Helix 20
20
F
197 201Right-handed 310
Helix 21
21
F
212 216Right-handed 310
Helix 22
22
F
301 303Right-handed 310
Helix 23
23
F
333 340Right-handed alpha
Helix 24
24
F
454 458Right-handed 310
Helix 25
25
F
460 466Right-handed alpha
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There are 38 sheets in PDB entry 3NVQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
484 489anti-parallel
Strand 3
A
476 480anti-parallel
Strand 4
A
467 471anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
86 90anti-parallel
Strand 3
A
94 99anti-parallel
Strand 4
A
110 112anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 136first strand
Strand 2
A
139 144anti-parallel
Strand 3
A
151 155anti-parallel
Strand 4
A
160 165anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 183first strand
Strand 2
A
186 189anti-parallel
Strand 3
A
204 207anti-parallel
Strand 4
A
212 213anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 230first strand
Strand 2
A
239 247anti-parallel
Strand 3
A
258 266anti-parallel
Strand 4
A
285 288anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 309first strand
Strand 2
A
320 326anti-parallel
Strand 3
A
332 338anti-parallel
Strand 4
A
402 404anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 417first strand
Strand 2
A
423 431anti-parallel
Strand 3
A
436 440anti-parallel
Strand 4
A
451 456anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 514first strand
Strand 2
A
517 520anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
551 556first strand
Strand 2
A
621 631parallel
Strand 3
A
609 616anti-parallel
Strand 4
A
574 579anti-parallel
Strand 5
A
582 587anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 567first strand
Strand 2
A
595 600anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 41first strand
Strand 2
B
446 451anti-parallel
Strand 3
B
438 443anti-parallel
Strand 4
B
430 431anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 51first strand
Strand 2
B
57 60anti-parallel
Strand 3
B
64 68anti-parallel
Strand 4
B
75 80anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 112first strand
Strand 2
B
122 127anti-parallel
Strand 3
B
134 138anti-parallel
Strand 4
B
148 150anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 169first strand
Strand 2
B
174 181anti-parallel
Strand 3
B
203 209anti-parallel
Strand 4
B
222 224anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 234first strand
Strand 2
B
243 252anti-parallel
Strand 3
B
257 258anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 240first strand
Strand 2
B
243 252anti-parallel
Strand 3
B
263 268anti-parallel
Strand 4
B
275 281anti-parallel
Strand 5
B
362 363parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
293 299first strand
Strand 2
B
305 311anti-parallel
Strand 3
B
326 332anti-parallel
Strand 4
B
371 373anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
376 383first strand
Strand 2
B
388 394anti-parallel
Strand 3
B
398 403anti-parallel
Strand 4
B
414 418anti-parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
480 482first strand
Strand 2
B
473 475anti-parallel
Strand 3
B
496 497anti-parallel
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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
54 55first strand
Strand 2
E
451 456parallel
Strand 3
E
436 440anti-parallel
Strand 4
E
423 431anti-parallel
Strand 5
E
408 417anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
66 68first strand
Strand 2
E
484 489anti-parallel
Strand 3
E
476 480anti-parallel
Strand 4
E
467 471anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
77 79first strand
Strand 2
E
86 90anti-parallel
Strand 3
E
94 99anti-parallel
Strand 4
E
110 112anti-parallel
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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
130 136first strand
Strand 2
E
139 144anti-parallel
Strand 3
E
151 155anti-parallel
Strand 4
E
161 165anti-parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
180 183first strand
Strand 2
E
186 189anti-parallel
Strand 3
E
204 207anti-parallel
Strand 4
E
212 213anti-parallel
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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
223 230first strand
Strand 2
E
239 247anti-parallel
Strand 3
E
258 266anti-parallel
Strand 4
E
285 288anti-parallel
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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
302 309first strand
Strand 2
E
320 326anti-parallel
Strand 3
E
332 338anti-parallel
Strand 4
E
402 404anti-parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
511 514first strand
Strand 2
E
517 520anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
551 556first strand
Strand 2
E
621 631parallel
Strand 3
E
609 616anti-parallel
Strand 4
E
574 579anti-parallel
Strand 5
E
582 587anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
562 567first strand
Strand 2
E
595 600anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
40 41first strand
Strand 2
F
446 451anti-parallel
Strand 3
F
438 443anti-parallel
Strand 4
F
430 431anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
48 51first strand
Strand 2
F
57 60anti-parallel
Strand 3
F
64 68anti-parallel
Strand 4
F
75 80anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
106 112first strand
Strand 2
F
122 127anti-parallel
Strand 3
F
134 138anti-parallel
Strand 4
F
148 150anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
162 169first strand
Strand 2
F
174 181anti-parallel
Strand 3
F
203 209anti-parallel
Strand 4
F
222 224anti-parallel
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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
231 234first strand
Strand 2
F
243 252anti-parallel
Strand 3
F
257 258anti-parallel
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There are 5 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
238 240first strand
Strand 2
F
243 252anti-parallel
Strand 3
F
263 268anti-parallel
Strand 4
F
275 281anti-parallel
Strand 5
F
362 363parallel
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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
293 300first strand
Strand 2
F
305 311anti-parallel
Strand 3
F
326 332anti-parallel
Strand 4
F
371 373anti-parallel
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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
376 383first strand
Strand 2
F
388 394anti-parallel
Strand 3
F
398 403anti-parallel
Strand 4
F
414 418anti-parallel
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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
480 482first strand
Strand 2
F
473 475anti-parallel
Strand 3
F
496 497anti-parallel
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