Analysis of interatomic Contacts of Structural Units in PDB entry:
3NY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NY5 entry

There are 4 chains in PDB entry 3NY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 151THR 233
B
 SER 150HIS 235
C
 MSE 152HIS 235
D
 HIS 151LEU 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3NY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
176 187Right-handed alpha
Helix 2
2
A
191 193Right-handed 310
Helix 3
3
A
213 218Right-handed 310
Helix 4
4
B
176 187Right-handed alpha
Helix 5
5
B
191 193Right-handed 310
Helix 6
6
B
213 218Right-handed 310
Helix 7
7
C
176 187Right-handed alpha
Helix 8
8
C
191 193Right-handed 310
Helix 9
9
C
213 218Right-handed 310
Helix 10
10
D
176 188Right-handed alpha
Helix 11
11
D
191 193Right-handed 310
Helix 12
12
D
213 218Right-handed 310
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There are 4 sheets in PDB entry 3NY5. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 170first strand
Strand 2
A
156 161anti-parallel
Strand 3
A
221 226parallel
Strand 4
A
195 199anti-parallel
Strand 5
A
206 208anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 170first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
221 226parallel
Strand 4
B
195 199anti-parallel
Strand 5
B
206 208anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
165 170first strand
Strand 2
C
156 161anti-parallel
Strand 3
C
221 226parallel
Strand 4
C
195 199anti-parallel
Strand 5
C
206 208anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
165 170first strand
Strand 2
D
156 161anti-parallel
Strand 3
D
221 226parallel
Strand 4
D
195 199anti-parallel
Strand 5
D
206 207anti-parallel
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