Analysis of interatomic Contacts of Structural Units in PDB entry:
3NYN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NYN entry

There are 2 chains in PDB entry 3NYN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 2SER 557
B
GLU 2SER 557
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 3NYN. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
2 19Right-handed alpha
Helix 2
2
A
29 34Right-handed alpha
Helix 3
3
A
39 41Right-handed 310
Helix 4
4
A
42 49Right-handed alpha
Helix 5
5
A
52 58Right-handed alpha
Helix 6
6
A
60 73Right-handed alpha
Helix 7
7
A
74 93Right-handed alpha
Helix 8
8
A
94 110Right-handed alpha
Helix 9
9
A
123 136Right-handed alpha
Helix 10
10
A
142 154Right-handed alpha
Helix 11
11
A
155 163Right-handed alpha
Helix 12
12
A
164 179Right-handed alpha
Helix 13
13
A
182 184Right-handed 310
Helix 14
14
A
219 226Right-handed alpha
Helix 15
15
A
227 241Right-handed alpha
Helix 16
16
A
270 277Right-handed alpha
Helix 17
17
A
284 305Right-handed alpha
Helix 18
18
A
313 315Right-handed 310
Helix 19
19
A
353 358Right-handed alpha
Helix 20
20
A
364 381Right-handed alpha
Helix 21
21
A
393 403Right-handed alpha
Helix 22
22
A
413 424Right-handed alpha
Helix 23
23
A
427 431Right-handed 310
Helix 24
24
A
438 444Right-handed alpha
Helix 25
25
A
445 449Right-handed 310
Helix 26
26
A
452 458Right-handed alpha
Helix 27
27
A
492 503Right-handed alpha
Helix 28
28
A
507 518Right-handed alpha
Helix 29
29
A
519 526Right-handed alpha
Helix 30
30
A
548 556Right-handed alpha
Helix 31
31
B
2 18Right-handed alpha
Helix 32
32
B
29 34Right-handed alpha
Helix 33
33
B
38 41Right-handed 310
Helix 34
34
B
42 49Right-handed alpha
Helix 35
35
B
52 58Right-handed alpha
Helix 36
36
B
60 73Right-handed alpha
Helix 37
37
B
74 93Right-handed alpha
Helix 38
38
B
94 110Right-handed alpha
Helix 39
39
B
123 136Right-handed alpha
Helix 40
40
B
142 154Right-handed alpha
Helix 41
41
B
155 163Right-handed alpha
Helix 42
42
B
164 178Right-handed alpha
Helix 43
43
B
182 184Right-handed 310
Helix 44
44
B
219 226Right-handed alpha
Helix 45
45
B
227 241Right-handed alpha
Helix 46
46
B
270 277Right-handed alpha
Helix 47
47
B
284 304Right-handed alpha
Helix 48
48
B
313 315Right-handed 310
Helix 49
49
B
353 358Right-handed alpha
Helix 50
50
B
364 381Right-handed alpha
Helix 51
51
B
393 403Right-handed alpha
Helix 52
52
B
413 424Right-handed alpha
Helix 53
53
B
438 445Right-handed alpha
Helix 54
54
B
446 449Right-handed 310
Helix 55
55
B
452 457Right-handed alpha
Helix 56
56
B
492 503Right-handed alpha
Helix 57
57
B
507 518Right-handed alpha
Helix 58
58
B
519 526Right-handed alpha
Helix 59
59
B
548 556Right-handed alpha
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There are 8 sheets in PDB entry 3NYN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
186 194first strand
Strand 2
A
199 205anti-parallel
Strand 3
A
211 218anti-parallel
Strand 4
A
258 263anti-parallel
Strand 5
A
249 254anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
307 308first strand
Strand 2
A
334 335anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
317 319first strand
Strand 2
A
325 327anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
342 343first strand
Strand 2
A
361 362anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
186 194first strand
Strand 2
B
199 205anti-parallel
Strand 3
B
211 218anti-parallel
Strand 4
B
258 264anti-parallel
Strand 5
B
249 254anti-parallel
Strand 6
B
505 506anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
307 308first strand
Strand 2
B
334 335anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
317 319first strand
Strand 2
B
325 327anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
342 343first strand
Strand 2
B
361 362anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il