Analysis of interatomic Contacts of Structural Units in PDB entry:
3NYO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NYO entry

There are 2 chains in PDB entry 3NYO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2SER 557
B
 GLU 2SER 557
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 3NYO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 18Right-handed alpha
Helix 2
2
A
29 34Right-handed alpha
Helix 3
3
A
38 41Right-handed 310
Helix 4
4
A
42 49Right-handed alpha
Helix 5
5
A
52 57Right-handed alpha
Helix 6
6
A
60 72Right-handed alpha
Helix 7
7
A
74 91Right-handed alpha
Helix 8
8
A
94 110Right-handed alpha
Helix 9
9
A
122 136Right-handed alpha
Helix 10
10
A
138 141Right-handed 310
Helix 11
11
A
142 154Right-handed alpha
Helix 12
12
A
155 163Right-handed alpha
Helix 13
13
A
164 178Right-handed alpha
Helix 14
14
A
182 184Right-handed 310
Helix 15
15
A
219 226Right-handed alpha
Helix 16
16
A
227 241Right-handed alpha
Helix 17
17
A
271 277Right-handed alpha
Helix 18
18
A
284 305Right-handed alpha
Helix 19
19
A
353 358Right-handed alpha
Helix 20
20
A
364 380Right-handed alpha
Helix 21
21
A
393 403Right-handed alpha
Helix 22
22
A
413 424Right-handed alpha
Helix 23
23
A
427 431Right-handed 310
Helix 24
24
A
438 444Right-handed alpha
Helix 25
25
A
445 449Right-handed 310
Helix 26
26
A
452 458Right-handed alpha
Helix 27
27
A
476 480Right-handed 310
Helix 28
28
A
492 503Right-handed alpha
Helix 29
29
A
507 518Right-handed alpha
Helix 30
30
A
519 526Right-handed alpha
Helix 31
31
A
548 553Right-handed alpha
Helix 32
32
B
2 17Right-handed alpha
Helix 33
33
B
29 34Right-handed alpha
Helix 34
34
B
38 49Right-handed alpha
Helix 35
35
B
52 58Right-handed alpha
Helix 36
36
B
60 72Right-handed alpha
Helix 37
37
B
74 91Right-handed alpha
Helix 38
38
B
94 110Right-handed alpha
Helix 39
39
B
123 136Right-handed alpha
Helix 40
40
B
142 154Right-handed alpha
Helix 41
41
B
155 163Right-handed alpha
Helix 42
42
B
164 179Right-handed alpha
Helix 43
43
B
182 184Right-handed 310
Helix 44
44
B
219 226Right-handed alpha
Helix 45
45
B
227 241Right-handed alpha
Helix 46
46
B
271 277Right-handed alpha
Helix 47
47
B
284 305Right-handed alpha
Helix 48
48
B
313 315Right-handed 310
Helix 49
49
B
353 358Right-handed alpha
Helix 50
50
B
364 380Right-handed alpha
Helix 51
51
B
393 403Right-handed alpha
Helix 52
52
B
413 424Right-handed alpha
Helix 53
53
B
427 431Right-handed 310
Helix 54
54
B
438 445Right-handed alpha
Helix 55
55
B
452 457Right-handed alpha
Helix 56
56
B
476 480Right-handed 310
Helix 57
57
B
492 503Right-handed alpha
Helix 58
58
B
507 518Right-handed alpha
Helix 59
59
B
519 526Right-handed alpha
Helix 60
60
B
548 554Right-handed alpha
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There are 7 sheets in PDB entry 3NYO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 194first strand
Strand 2
A
199 205anti-parallel
Strand 3
A
211 218anti-parallel
Strand 4
A
258 264anti-parallel
Strand 5
A
249 254anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
317 319anti-parallel
Strand 3
A
325 327anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
334 335anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 187first strand
Strand 2
B
199 205anti-parallel
Strand 3
B
191 194anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 187first strand
Strand 2
B
199 205anti-parallel
Strand 3
B
211 218anti-parallel
Strand 4
B
258 263anti-parallel
Strand 5
B
249 254anti-parallel
Strand 6
B
505 506anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 270first strand
Strand 2
B
317 319anti-parallel
Strand 3
B
325 327anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 308first strand
Strand 2
B
334 335anti-parallel
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