Analysis of interatomic Contacts of Structural Units in PDB entry:
3NYX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NYX entry

There is 1 chain in PDB entry 3NYX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 889HIS 1178
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 3NYX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
893 895Right-handed 310
Helix 2
2
A
937 951Right-handed alpha
Helix 3
3
A
952 954Right-handed 310
Helix 4
4
A
986 990Right-handed alpha
Helix 5
5
A
991 993Right-handed 310
Helix 6
6
A
996 1017Right-handed alpha
Helix 7
7
A
1025 1027Right-handed 310
Helix 8
8
A
1064 1068Right-handed 310
Helix 9
9
A
1069 1075Right-handed alpha
Helix 10
10
A
1080 1096Right-handed alpha
Helix 11
11
A
1099 1102Right-handed 310
Helix 12
12
A
1103 1113Right-handed alpha
Helix 13
13
A
1120 1130Right-handed alpha
Helix 14
14
A
1141 1152Right-handed alpha
Helix 15
15
A
1155 1159Right-handed 310
Helix 16
16
A
1161 1177Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3NYX. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
897 903first strand
Strand 2
A
911 916anti-parallel
Strand 3
A
925 933anti-parallel
Strand 4
A
973 979anti-parallel
Strand 5
A
962 968anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
984 985first strand
Strand 2
A
1029 1031anti-parallel
Strand 3
A
1037 1039anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1019 1020first strand
Strand 2
A
1046 1047anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1054 1056first strand
Strand 2
A
1077 1079anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il