Analysis of interatomic Contacts of Structural Units in PDB entry:
3OF6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OF6 entry

There are 6 chains in PDB entry 3OF6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 2ARG 245
B
MET 2ASP 247
C
HIS 1ASP 247
D
GLY 7SER 110
E
GLY 7SER 110
F
THR 8SER 110
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3OF6. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
83 87Right-handed 310
Helix 2
2
A
119 123Right-handed 310
Helix 3
3
A
134 142Right-handed alpha
Helix 4
4
A
201 205Right-handed alpha
Helix 5
5
B
83 87Right-handed 310
Helix 6
6
B
119 123Right-handed 310
Helix 7
7
B
134 142Right-handed alpha
Helix 8
8
B
201 205Right-handed alpha
Helix 9
9
C
83 87Right-handed 310
Helix 10
10
C
119 123Right-handed 310
Helix 11
11
C
134 139Right-handed alpha
Helix 12
12
C
201 205Right-handed alpha
Helix 13
13
D
81 85Right-handed 310
Helix 14
14
E
83 87Right-handed 310
Helix 15
15
F
82 86Right-handed 310
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There are 26 sheets in PDB entry 3OF6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
5 7first strand
Strand 2
A
19 24anti-parallel
Strand 3
A
75 79anti-parallel
Strand 4
A
65 68anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
10 14first strand
Strand 2
A
112 117parallel
Strand 3
A
89 95anti-parallel
Strand 4
A
31 37anti-parallel
Strand 5
A
44 50anti-parallel
Strand 6
A
54 56anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
10 14first strand
Strand 2
A
112 117parallel
Strand 3
A
89 95anti-parallel
Strand 4
A
107 108anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
127 131first strand
Strand 2
A
143 153anti-parallel
Strand 3
A
191 200anti-parallel
Strand 4
A
173 175anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
127 131first strand
Strand 2
A
143 153anti-parallel
Strand 3
A
191 200anti-parallel
Strand 4
A
180 181anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
167 169first strand
Strand 2
A
158 164anti-parallel
Strand 3
A
210 217anti-parallel
Strand 4
A
236 243anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
5 7first strand
Strand 2
B
19 24anti-parallel
Strand 3
B
75 79anti-parallel
Strand 4
B
65 68anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
10 11first strand
Strand 2
B
112 114parallel
Strand 3
B
88 91anti-parallel
Strand 4
B
31 37anti-parallel
Strand 5
B
44 50anti-parallel
Strand 6
B
54 56anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
127 131first strand
Strand 2
B
143 153anti-parallel
Strand 3
B
191 200anti-parallel
Strand 4
B
173 175anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
127 131first strand
Strand 2
B
143 153anti-parallel
Strand 3
B
191 200anti-parallel
Strand 4
B
180 181anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
167 169first strand
Strand 2
B
158 164anti-parallel
Strand 3
B
211 217anti-parallel
Strand 4
B
237 241anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
5 7first strand
Strand 2
C
19 24anti-parallel
Strand 3
C
75 79anti-parallel
Strand 4
C
65 68anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
10 14first strand
Strand 2
C
112 117parallel
Strand 3
C
89 95anti-parallel
Strand 4
C
31 37anti-parallel
Strand 5
C
44 50anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
10 14first strand
Strand 2
C
112 117parallel
Strand 3
C
89 95anti-parallel
Strand 4
C
107 108anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
127 131first strand
Strand 2
C
143 153anti-parallel
Strand 3
C
191 200anti-parallel
Strand 4
C
173 175anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
127 131first strand
Strand 2
C
143 153anti-parallel
Strand 3
C
191 200anti-parallel
Strand 4
C
180 181anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
167 168first strand
Strand 2
C
158 164anti-parallel
Strand 3
C
210 217anti-parallel
Strand 4
C
237 243anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
17 20first strand
Strand 2
D
25 36anti-parallel
Strand 3
D
69 79anti-parallel
Strand 4
D
58 59anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
17 20first strand
Strand 2
D
25 36anti-parallel
Strand 3
D
69 79anti-parallel
Strand 4
D
63 65anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
54 55first strand
Strand 2
D
46 48anti-parallel
Strand 3
D
90 93anti-parallel
Strand 4
D
102 103anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
17 20first strand
Strand 2
E
25 36anti-parallel
Strand 3
E
70 79anti-parallel
Strand 4
E
58 59anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
17 20first strand
Strand 2
E
25 36anti-parallel
Strand 3
E
70 79anti-parallel
Strand 4
E
63 64anti-parallel
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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
54 55first strand
Strand 2
E
46 49anti-parallel
Strand 3
E
89 93anti-parallel
Strand 4
E
102 103anti-parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
13 20first strand
Strand 2
F
25 36anti-parallel
Strand 3
F
70 79anti-parallel
Strand 4
F
58 59anti-parallel
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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
13 20first strand
Strand 2
F
25 36anti-parallel
Strand 3
F
70 79anti-parallel
Strand 4
F
63 64anti-parallel
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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
54 55first strand
Strand 2
F
46 48anti-parallel
Strand 3
F
90 93anti-parallel
Strand 4
F
102 103anti-parallel
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