Analysis of interatomic Contacts of Structural Units in PDB entry:
3OOT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OOT entry

There are 2 chains in PDB entry 3OOT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2ARG 326
B
 GLY -2ARG 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3OOT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 53Right-handed alpha
Helix 2
2
A
57 61Right-handed 310
Helix 3
3
A
108 113Right-handed alpha
Helix 4
4
A
125 133Right-handed 310
Helix 5
5
A
135 143Right-handed alpha
Helix 6
6
A
224 236Right-handed alpha
Helix 7
7
A
251 255Right-handed 310
Helix 8
8
A
270 274Right-handed alpha
Helix 9
9
A
302 308Right-handed alpha
Helix 10
10
B
47 52Right-handed alpha
Helix 11
11
B
57 61Right-handed 310
Helix 12
12
B
108 113Right-handed alpha
Helix 13
13
B
125 133Right-handed 310
Helix 14
14
B
135 143Right-handed alpha
Helix 15
15
B
224 236Right-handed alpha
Helix 16
16
B
251 255Right-handed 310
Helix 17
17
B
270 275Right-handed alpha
Helix 18
18
B
302 308Right-handed alpha
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There are 11 sheets in PDB entry 3OOT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 74first strand
Strand 2
A
79 91anti-parallel
Strand 3
A
13 20anti-parallel
Strand 4
A
2 9anti-parallel
Strand 5
A
163 167anti-parallel
Strand 6
A
150 155anti-parallel
Strand 7
A
309 314anti-parallel
Strand 8
A
319 325anti-parallel
Strand 9
A
175 183anti-parallel
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There are 13 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 74first strand
Strand 2
A
79 91anti-parallel
Strand 3
A
94 106anti-parallel
Strand 4
A
38 41parallel
Strand 5
A
119 122anti-parallel
Strand 6
A
25 32parallel
Strand 7
A
13 20anti-parallel
Strand 8
A
2 9anti-parallel
Strand 9
A
163 167anti-parallel
Strand 10
A
150 155anti-parallel
Strand 11
A
309 314anti-parallel
Strand 12
A
319 325anti-parallel
Strand 13
A
175 183anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 194first strand
Strand 2
A
210 214anti-parallel
Strand 3
A
299 301parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 199first strand
Strand 2
A
258 262anti-parallel
Strand 3
A
265 269anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 223first strand
Strand 2
A
286 288parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
245 248anti-parallel
Strand 3
A
281 284anti-parallel
Strand 4
A
275 276anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 74first strand
Strand 2
B
79 91anti-parallel
Strand 3
B
13 20anti-parallel
Strand 4
B
2 9anti-parallel
Strand 5
B
163 167anti-parallel
Strand 6
B
150 155anti-parallel
Strand 7
B
309 314anti-parallel
Strand 8
B
319 325anti-parallel
Strand 9
B
175 183anti-parallel
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There are 13 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 74first strand
Strand 2
B
79 91anti-parallel
Strand 3
B
94 106anti-parallel
Strand 4
B
38 41parallel
Strand 5
B
119 122anti-parallel
Strand 6
B
25 32parallel
Strand 7
B
13 20anti-parallel
Strand 8
B
2 9anti-parallel
Strand 9
B
163 167anti-parallel
Strand 10
B
150 155anti-parallel
Strand 11
B
309 314anti-parallel
Strand 12
B
319 325anti-parallel
Strand 13
B
175 183anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 194first strand
Strand 2
B
210 214anti-parallel
Strand 3
B
299 301parallel
Strand 4
B
221 223anti-parallel
Strand 5
B
286 288parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 205first strand
Strand 2
B
197 199anti-parallel
Strand 3
B
258 262anti-parallel
Strand 4
B
265 269anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 239first strand
Strand 2
B
245 248anti-parallel
Strand 3
B
281 283anti-parallel
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