Analysis of interatomic Contacts of Structural Units in PDB entry:
3OP5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OP5 entry

There are 4 chains in PDB entry 3OP5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 21LEU 341
B
GLU 21LEU 341
C
GLN 22LEU 341
D
VAL 25LEU 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 3OP5. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
77 91Right-handed alpha
Helix 2
2
A
92 103Right-handed alpha
Helix 3
3
A
138 145Right-handed alpha
Helix 4
4
A
150 171Right-handed alpha
Helix 5
5
A
179 181Right-handed 310
Helix 6
6
A
205 209Right-handed 310
Helix 7
7
A
229 234Right-handed alpha
Helix 8
8
A
239 257Right-handed alpha
Helix 9
9
A
261 265Right-handed 310
Helix 10
10
A
267 281Right-handed alpha
Helix 11
11
A
281 290Right-handed alpha
Helix 12
12
A
296 308Right-handed alpha
Helix 13
13
A
316 331Right-handed alpha
Helix 14
14
B
77 91Right-handed alpha
Helix 15
15
B
92 103Right-handed alpha
Helix 16
16
B
138 145Right-handed alpha
Helix 17
17
B
150 171Right-handed alpha
Helix 18
18
B
179 181Right-handed 310
Helix 19
19
B
205 209Right-handed 310
Helix 20
20
B
229 234Right-handed alpha
Helix 21
21
B
239 257Right-handed alpha
Helix 22
22
B
261 265Right-handed 310
Helix 23
23
B
267 281Right-handed alpha
Helix 24
24
B
281 290Right-handed alpha
Helix 25
25
B
296 308Right-handed alpha
Helix 26
26
B
316 331Right-handed alpha
Helix 27
27
C
80 91Right-handed alpha
Helix 28
28
C
92 103Right-handed alpha
Helix 29
29
C
138 145Right-handed alpha
Helix 30
30
C
150 171Right-handed alpha
Helix 31
31
C
179 181Right-handed 310
Helix 32
32
C
205 209Right-handed 310
Helix 33
33
C
229 234Right-handed alpha
Helix 34
34
C
239 257Right-handed alpha
Helix 35
35
C
261 265Right-handed 310
Helix 36
36
C
267 281Right-handed alpha
Helix 37
37
C
281 290Right-handed alpha
Helix 38
38
C
296 308Right-handed alpha
Helix 39
39
C
316 331Right-handed alpha
Helix 40
40
D
79 91Right-handed alpha
Helix 41
41
D
92 104Right-handed alpha
Helix 42
42
D
138 145Right-handed alpha
Helix 43
43
D
150 171Right-handed alpha
Helix 44
44
D
179 181Right-handed 310
Helix 45
45
D
205 209Right-handed 310
Helix 46
46
D
216 220Right-handed 310
Helix 47
47
D
229 234Right-handed alpha
Helix 48
48
D
239 257Right-handed alpha
Helix 49
49
D
261 265Right-handed 310
Helix 50
50
D
267 281Right-handed alpha
Helix 51
51
D
281 290Right-handed alpha
Helix 52
52
D
296 308Right-handed alpha
Helix 53
53
D
316 331Right-handed alpha
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There are 12 sheets in PDB entry 3OP5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
28 30first strand
Strand 2
A
36 42anti-parallel
Strand 3
A
50 56anti-parallel
Strand 4
A
68 74anti-parallel
Strand 5
A
124 132anti-parallel
Strand 6
A
113 121anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
134 137first strand
Strand 2
A
183 186anti-parallel
Strand 3
A
193 195anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
173 174first strand
Strand 2
A
202 203anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
28 30first strand
Strand 2
B
36 42anti-parallel
Strand 3
B
50 56anti-parallel
Strand 4
B
68 74anti-parallel
Strand 5
B
124 132anti-parallel
Strand 6
B
113 121anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
134 137first strand
Strand 2
B
183 186anti-parallel
Strand 3
B
193 195anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
173 174first strand
Strand 2
B
202 203anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
28 30first strand
Strand 2
C
36 44anti-parallel
Strand 3
C
50 56anti-parallel
Strand 4
C
68 72anti-parallel
Strand 5
C
125 132anti-parallel
Strand 6
C
113 120anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
134 137first strand
Strand 2
C
183 186anti-parallel
Strand 3
C
193 195anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
173 174first strand
Strand 2
C
202 203anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
28 30first strand
Strand 2
D
36 42anti-parallel
Strand 3
D
51 56anti-parallel
Strand 4
D
68 74anti-parallel
Strand 5
D
126 132anti-parallel
Strand 6
D
113 119anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
134 137first strand
Strand 2
D
183 186anti-parallel
Strand 3
D
193 195anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
173 174first strand
Strand 2
D
202 203anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il