Analysis of interatomic Contacts of Structural Units in PDB entry:
3OVS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OVS entry

There are 4 chains in PDB entry 3OVS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1MET 441
B
MET 1ASP 437
C
G 1 C 34
D
G 1 C 34
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3OVS. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
2 15Right-handed alpha
Helix 2
2
A
17 36Right-handed alpha
Helix 3
3
A
46 50Right-handed alpha
Helix 4
4
A
71 87Right-handed alpha
Helix 5
5
A
129 139Right-handed alpha
Helix 6
6
A
144 158Right-handed alpha
Helix 7
7
A
171 183Right-handed alpha
Helix 8
8
A
184 193Right-handed alpha
Helix 9
9
A
231 248Right-handed alpha
Helix 10
10
A
250 255Right-handed 310
Helix 11
11
A
263 275Right-handed alpha
Helix 12
12
A
289 311Right-handed alpha
Helix 13
13
A
351 360Right-handed alpha
Helix 14
14
A
384 396Right-handed alpha
Helix 15
15
A
397 400Right-handed 310
Helix 16
16
A
401 411Right-handed alpha
Helix 17
17
A
417 422Right-handed alpha
Helix 18
18
A
425 434Right-handed alpha
Helix 19
19
B
4 15Right-handed alpha
Helix 20
20
B
17 38Right-handed alpha
Helix 21
21
B
47 51Right-handed 310
Helix 22
22
B
71 85Right-handed alpha
Helix 23
23
B
128 138Right-handed alpha
Helix 24
24
B
145 158Right-handed alpha
Helix 25
25
B
171 183Right-handed alpha
Helix 26
26
B
184 193Right-handed alpha
Helix 27
27
B
231 248Right-handed alpha
Helix 28
28
B
250 254Right-handed 310
Helix 29
29
B
263 275Right-handed alpha
Helix 30
30
B
289 311Right-handed alpha
Helix 31
31
B
351 360Right-handed alpha
Helix 32
32
B
384 396Right-handed alpha
Helix 33
33
B
397 400Right-handed 310
Helix 34
34
B
401 411Right-handed alpha
Helix 35
35
B
418 423Right-handed 310
Helix 36
36
B
425 434Right-handed alpha
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There are 8 sheets in PDB entry 3OVS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
42 45first strand
Strand 2
A
59 66anti-parallel
Strand 3
A
107 115parallel
Strand 4
A
100 104anti-parallel
Strand 5
A
89 91anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
207 210first strand
Strand 2
A
199 202anti-parallel
Strand 3
A
215 218parallel
Strand 4
A
221 225anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
315 322first strand
Strand 2
A
326 333anti-parallel
Strand 3
A
277 284anti-parallel
Strand 4
A
413 416anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
341 348first strand
Strand 2
A
373 379anti-parallel
Strand 3
A
368 370anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
42 45first strand
Strand 2
B
59 66anti-parallel
Strand 3
B
107 115parallel
Strand 4
B
100 104anti-parallel
Strand 5
B
89 92anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
207 210first strand
Strand 2
B
199 202anti-parallel
Strand 3
B
215 217parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
315 322first strand
Strand 2
B
326 333anti-parallel
Strand 3
B
277 284anti-parallel
Strand 4
B
413 416anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
341 348first strand
Strand 2
B
373 379anti-parallel
Strand 3
B
368 370anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il