Analysis of interatomic Contacts of Structural Units in PDB entry:
3P1M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P1M entry

There are 8 chains in PDB entry 3P1M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 66GLN 191
B
LYS 66GLN 191
C
ASP 65GLN 191
D
ASP 65GLN 191
E
ASP 65GLN 191
F
GLU 64GLN 191
G
GLU 64GLN 191
H
GLU 64GLN 191
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3P1M. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
88 96Right-handed alpha
Helix 2
2
A
120 126Right-handed alpha
Helix 3
3
A
131 139Right-handed alpha
Helix 4
4
A
157 161Right-handed 310
Helix 5
5
A
170 175Right-handed alpha
Helix 6
6
A
187 191Right-handed 310
Helix 7
7
B
88 96Right-handed alpha
Helix 8
8
B
120 125Right-handed alpha
Helix 9
9
B
131 139Right-handed alpha
Helix 10
10
B
157 161Right-handed 310
Helix 11
11
B
170 175Right-handed alpha
Helix 12
12
C
88 96Right-handed alpha
Helix 13
13
C
120 126Right-handed alpha
Helix 14
14
C
131 139Right-handed alpha
Helix 15
15
C
157 161Right-handed 310
Helix 16
16
C
170 175Right-handed alpha
Helix 17
17
C
187 191Right-handed 310
Helix 18
18
D
88 96Right-handed alpha
Helix 19
19
D
120 125Right-handed alpha
Helix 20
20
D
131 140Right-handed alpha
Helix 21
21
D
157 161Right-handed 310
Helix 22
22
D
170 175Right-handed alpha
Helix 23
23
E
88 96Right-handed alpha
Helix 24
24
E
120 125Right-handed alpha
Helix 25
25
E
131 139Right-handed alpha
Helix 26
26
E
157 161Right-handed 310
Helix 27
27
E
170 175Right-handed alpha
Helix 28
28
F
88 96Right-handed alpha
Helix 29
29
F
120 125Right-handed alpha
Helix 30
30
F
131 139Right-handed alpha
Helix 31
31
F
157 161Right-handed 310
Helix 32
32
F
170 175Right-handed alpha
Helix 33
33
G
88 96Right-handed alpha
Helix 34
34
G
120 125Right-handed alpha
Helix 35
35
G
131 139Right-handed alpha
Helix 36
36
G
157 161Right-handed 310
Helix 37
37
G
170 175Right-handed alpha
Helix 38
38
H
88 96Right-handed alpha
Helix 39
39
H
120 125Right-handed alpha
Helix 40
40
H
131 140Right-handed alpha
Helix 41
41
H
157 161Right-handed 310
Helix 42
42
H
170 175Right-handed alpha
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There are 12 sheets in PDB entry 3P1M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
78 83first strand
Strand 2
A
67 72anti-parallel
Strand 3
A
163 166parallel
Strand 4
A
116 119anti-parallel
Strand 5
A
148 150anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
78 83first strand
Strand 2
B
67 72anti-parallel
Strand 3
B
163 166parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
116 118first strand
Strand 2
B
148 150anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
78 84first strand
Strand 2
C
66 72anti-parallel
Strand 3
C
163 166parallel
Strand 4
C
116 119anti-parallel
Strand 5
C
148 150anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
78 84first strand
Strand 2
D
66 72anti-parallel
Strand 3
D
163 166parallel
Strand 4
D
116 119anti-parallel
Strand 5
D
148 150anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
78 84first strand
Strand 2
E
66 72anti-parallel
Strand 3
E
163 166parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
116 118first strand
Strand 2
E
148 150anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
78 84first strand
Strand 2
F
66 72anti-parallel
Strand 3
F
163 166parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
116 118first strand
Strand 2
F
148 150anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
78 84first strand
Strand 2
G
66 72anti-parallel
Strand 3
G
163 166parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
116 118first strand
Strand 2
G
148 150anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
78 84first strand
Strand 2
H
66 72anti-parallel
Strand 3
H
163 166parallel
Strand 4
H
116 119anti-parallel
Strand 5
H
148 150anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il