Analysis of interatomic Contacts of Structural Units in PDB entry:
3P8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P8M entry

There are 4 chains in PDB entry 3P8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 3GLY 89
B
ASP 3GLY 89
D
GLY 130VAL 172
C
SER 131VAL 172
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 3P8M. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
14 32Right-handed alpha
Helix 2
2
A
34 51Right-handed alpha
Helix 3
3
B
14 32Right-handed alpha
Helix 4
4
B
34 51Right-handed alpha
Helix 5
5
D
143 172Right-handed alpha
Helix 6
6
C
142 172Right-handed alpha
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There are 2 sheets in PDB entry 3P8M. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
6 13first strand
Strand 2
A
72 78anti-parallel
Strand 3
A
81 87anti-parallel
Strand 4
A
54 68anti-parallel
Strand 5
B
54 68anti-parallel
Strand 6
D
132 137first strand
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
6 13first strand
Strand 2
B
72 78anti-parallel
Strand 3
B
81 87anti-parallel
Strand 4
B
54 68anti-parallel
Strand 5
A
54 68anti-parallel
Strand 6
C
132 137first strand
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il