Analysis of interatomic Contacts of Structural Units in PDB entry:
3PDC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PDC entry

There are 2 chains in PDB entry 3PDC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 224ASN 547
B
 ALA 224ASN 547
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3PDC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
231 235Right-handed 310
Helix 2
2
A
268 273Right-handed 310
Helix 3
3
A
274 282Right-handed alpha
Helix 4
4
A
302 306Right-handed 310
Helix 5
5
A
307 323Right-handed alpha
Helix 6
6
A
333 345Right-handed alpha
Helix 7
7
A
346 348Right-handed 310
Helix 8
8
A
376 378Right-handed 310
Helix 9
9
A
379 387Right-handed alpha
Helix 10
10
A
389 398Right-handed alpha
Helix 11
11
A
398 407Right-handed alpha
Helix 12
12
A
409 413Right-handed 310
Helix 13
13
A
420 425Right-handed alpha
Helix 14
14
A
442 453Right-handed alpha
Helix 15
15
A
458 464Right-handed alpha
Helix 16
16
A
467 477Right-handed alpha
Helix 17
17
A
503 508Right-handed 310
Helix 18
18
A
524 529Right-handed alpha
Helix 19
19
A
529 542Right-handed alpha
Helix 20
20
B
231 235Right-handed 310
Helix 21
21
B
268 273Right-handed 310
Helix 22
22
B
274 282Right-handed alpha
Helix 23
23
B
302 306Right-handed 310
Helix 24
24
B
307 323Right-handed alpha
Helix 25
25
B
333 345Right-handed alpha
Helix 26
26
B
346 348Right-handed 310
Helix 27
27
B
376 378Right-handed 310
Helix 28
28
B
379 387Right-handed alpha
Helix 29
29
B
389 398Right-handed alpha
Helix 30
30
B
398 407Right-handed alpha
Helix 31
31
B
409 413Right-handed 310
Helix 32
32
B
420 425Right-handed alpha
Helix 33
33
B
442 453Right-handed alpha
Helix 34
34
B
458 464Right-handed alpha
Helix 35
35
B
467 477Right-handed alpha
Helix 36
36
B
503 508Right-handed 310
Helix 37
37
B
524 529Right-handed alpha
Helix 38
38
B
529 542Right-handed alpha
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There are 2 sheets in PDB entry 3PDC. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 243first strand
Strand 2
A
246 253anti-parallel
Strand 3
A
285 289anti-parallel
Strand 4
A
258 262parallel
Strand 5
A
327 332parallel
Strand 6
A
350 356parallel
Strand 7
A
487 492parallel
Strand 8
A
513 518parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 243first strand
Strand 2
B
246 253anti-parallel
Strand 3
B
285 289anti-parallel
Strand 4
B
258 262parallel
Strand 5
B
327 332parallel
Strand 6
B
350 356parallel
Strand 7
B
487 492parallel
Strand 8
B
513 518parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il