Analysis of interatomic Contacts of Structural Units in PDB entry:
3PEP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PEP entry

There is 1 chain in PDB entry 3PEP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ILE 1ALA 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3PEP. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
A
A
48 52Right-handed alpha
Helix 2
H1
A
58 60Right-handed 310
Helix 3
B
A
110 114Right-handed alpha
Helix 4
H2
A
126 128Right-handed 310
Helix 5
H3
A
130 132Right-handed 310
Helix 6
C
A
136 142Right-handed alpha
Helix 7
H4
A
172 174Right-handed 310
Helix 8
D
A
225 235Right-handed alpha
Helix 9
E
A
249 255Right-handed alpha
Helix 10
F
A
271 274Right-handed alpha
Helix 11
G
A
303 306Right-handed alpha
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There are 7 sheets in PDB entry 3PEP. Click on sheet of interest to get list of strands forming it: I, II, III, IV, V, VI, VII,

There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2 5first strand
Strand 2
A
164 167anti-parallel
Strand 3
A
150 154anti-parallel
Strand 4
A
309 314anti-parallel
Strand 5
A
319 324anti-parallel
Strand 6
A
180 183anti-parallel
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There are 4 strands in II sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
25 28first strand
Strand 2
A
15 20anti-parallel
Strand 3
A
87 91anti-parallel
Strand 4
A
94 97anti-parallel
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There are 4 strands in III sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
202 203first strand
Strand 2
A
196 198anti-parallel
Strand 3
A
258 262anti-parallel
Strand 4
A
265 269anti-parallel
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There are 3 strands in IV sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
70 74first strand
Strand 2
A
79 83anti-parallel
Strand 3
A
105 106anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
238 240first strand
Strand 2
A
245 247anti-parallel
Strand 3
A
282 284anti-parallel
Strand 4
A
275 277anti-parallel
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There are 5 strands in VI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
191 195first strand
Strand 2
A
210 214anti-parallel
Strand 3
A
298 301parallel
Strand 4
A
221 223anti-parallel
Strand 5
A
286 288anti-parallel
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There are 6 strands in VII sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
29 32first strand
Strand 2
A
119 122parallel
Strand 3
A
38 41anti-parallel
Strand 4
A
98 104parallel
Strand 5
A
84 86anti-parallel
Strand 6
A
65 69anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il