Analysis of interatomic Contacts of Structural Units in PDB entry:
3PT6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PT6 entry

There are 6 chains in PDB entry 3PT6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 651SER 1600
B
ALA 650SER 1600
C
T 1 G 19
D
T 1 G 19
I
C 20 A 38
J
C 20 A 38
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 65 helices in PDB entry 3PT6. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
659 664Right-handed alpha
Helix 2
2
A
689 693Right-handed 310
Helix 3
3
A
802 806Right-handed 310
Helix 4
4
A
808 812Right-handed 310
Helix 5
5
A
892 896Right-handed 310
Helix 6
6
A
897 911Right-handed alpha
Helix 7
7
A
946 950Right-handed 310
Helix 8
8
A
973 977Right-handed 310
Helix 9
9
A
1026 1030Right-handed 310
Helix 10
10
A
1033 1037Right-handed 310
Helix 11
11
A
1057 1059Right-handed 310
Helix 12
12
A
1074 1082Right-handed alpha
Helix 13
13
A
1152 1162Right-handed alpha
Helix 14
14
A
1173 1184Right-handed alpha
Helix 15
15
A
1193 1203Right-handed alpha
Helix 16
16
A
1229 1233Right-handed 310
Helix 17
17
A
1243 1248Right-handed alpha
Helix 18
18
A
1249 1262Right-handed alpha
Helix 19
19
A
1273 1276Right-handed 310
Helix 20
20
A
1280 1294Right-handed alpha
Helix 21
21
A
1305 1308Right-handed 310
Helix 22
22
A
1338 1343Right-handed 310
Helix 23
23
A
1369 1375Right-handed alpha
Helix 24
24
A
1397 1404Right-handed alpha
Helix 25
25
A
1421 1430Right-handed alpha
Helix 26
26
A
1438 1442Right-handed 310
Helix 27
27
A
1479 1484Right-handed 310
Helix 28
28
A
1488 1492Right-handed 310
Helix 29
29
A
1500 1506Right-handed alpha
Helix 30
30
A
1507 1513Right-handed 310
Helix 31
31
A
1551 1559Right-handed alpha
Helix 32
32
A
1570 1581Right-handed alpha
Helix 33
33
A
1583 1596Right-handed alpha
Helix 34
34
B
659 664Right-handed alpha
Helix 35
35
B
670 675Right-handed alpha
Helix 36
36
B
676 680Right-handed 310
Helix 37
37
B
689 693Right-handed 310
Helix 38
38
B
804 806Right-handed 310
Helix 39
39
B
808 812Right-handed 310
Helix 40
40
B
897 911Right-handed alpha
Helix 41
41
B
973 979Right-handed 310
Helix 42
42
B
987 991Right-handed 310
Helix 43
43
B
1026 1030Right-handed 310
Helix 44
44
B
1057 1059Right-handed 310
Helix 45
45
B
1074 1082Right-handed alpha
Helix 46
46
B
1103 1107Right-handed 310
Helix 47
47
B
1152 1162Right-handed alpha
Helix 48
48
B
1173 1184Right-handed alpha
Helix 49
49
B
1193 1203Right-handed alpha
Helix 50
50
B
1239 1248Right-handed alpha
Helix 51
51
B
1249 1262Right-handed alpha
Helix 52
52
B
1272 1275Right-handed 310
Helix 53
53
B
1276 1293Right-handed alpha
Helix 54
54
B
1305 1308Right-handed 310
Helix 55
55
B
1338 1342Right-handed 310
Helix 56
56
B
1369 1375Right-handed alpha
Helix 57
57
B
1397 1405Right-handed alpha
Helix 58
58
B
1421 1430Right-handed alpha
Helix 59
59
B
1438 1442Right-handed 310
Helix 60
60
B
1479 1483Right-handed 310
Helix 61
61
B
1500 1506Right-handed alpha
Helix 62
62
B
1507 1513Right-handed 310
Helix 63
63
B
1551 1559Right-handed alpha
Helix 64
64
B
1570 1581Right-handed alpha
Helix 65
65
B
1583 1599Right-handed alpha
Back to top of page

There are 22 sheets in PDB entry 3PT6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
726 727first strand
Strand 2
A
765 770anti-parallel
Strand 3
A
778 788anti-parallel
Strand 4
A
793 799anti-parallel
Strand 5
A
823 827anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
742 743first strand
Strand 2
A
747 750anti-parallel
Strand 3
A
778 788anti-parallel
Strand 4
A
765 770anti-parallel
Strand 5
A
831 834anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
734 737first strand
Strand 2
A
752 755anti-parallel
Strand 3
A
758 761anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
816 819first strand
Strand 2
A
867 874parallel
Strand 3
A
837 839parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
816 819first strand
Strand 2
A
867 874parallel
Strand 3
A
879 881anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
913 921first strand
Strand 2
A
924 932anti-parallel
Strand 3
A
996 1008anti-parallel
Strand 4
A
935 938first strand
Back to list of sheets
Back to top of page

There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
913 921first strand
Strand 2
A
924 932anti-parallel
Strand 3
A
1011 1025first strand
Strand 4
A
1044 1055anti-parallel
Strand 5
A
1085 1091parallel
Strand 6
A
1061 1067parallel
Strand 7
A
942 945anti-parallel
Strand 8
A
996 1008anti-parallel
Strand 9
A
935 938first strand
Back to list of sheets
Back to top of page

There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1188 1190first strand
Strand 2
A
1164 1170parallel
Strand 3
A
1142 1147parallel
Strand 4
A
1222 1225parallel
Strand 5
A
1265 1271parallel
Strand 6
A
1314 1321anti-parallel
Strand 7
A
1296 1303anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1346 1348first strand
Strand 2
A
1351 1353anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1388 1390first strand
Strand 2
A
1411 1413anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1447 1448first strand
Strand 2
A
1454 1455anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
734 737first strand
Strand 2
B
752 755anti-parallel
Strand 3
B
758 761anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
742 743first strand
Strand 2
B
747 750anti-parallel
Strand 3
B
778 788anti-parallel
Strand 4
B
793 802anti-parallel
Strand 5
B
816 827anti-parallel
Strand 6
B
867 874parallel
Strand 7
B
837 839parallel
Back to list of sheets
Back to top of page

There are 7 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
831 835first strand
Strand 2
B
765 768anti-parallel
Strand 3
B
778 788anti-parallel
Strand 4
B
793 802anti-parallel
Strand 5
B
816 827anti-parallel
Strand 6
B
867 874parallel
Strand 7
B
879 881anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
913 921first strand
Strand 2
B
924 932anti-parallel
Strand 3
B
996 1008anti-parallel
Strand 4
B
1011 1025anti-parallel
Strand 5
B
1044 1055anti-parallel
Strand 6
B
1085 1093parallel
Strand 7
B
1098 1100anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
913 921first strand
Strand 2
B
924 932anti-parallel
Strand 3
B
935 938anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
913 921first strand
Strand 2
B
924 932anti-parallel
Strand 3
B
996 1008anti-parallel
Strand 4
B
942 945anti-parallel
Strand 5
B
1061 1067anti-parallel
Strand 6
B
1085 1093parallel
Strand 7
B
1098 1100anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1188 1190first strand
Strand 2
B
1164 1170parallel
Strand 3
B
1142 1147parallel
Strand 4
B
1222 1225parallel
Strand 5
B
1265 1270parallel
Strand 6
B
1314 1321anti-parallel
Strand 7
B
1296 1303anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1346 1347first strand
Strand 2
B
1352 1353anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1388 1390first strand
Strand 2
B
1411 1413anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1447 1448first strand
Strand 2
B
1454 1455anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1517 1518first strand
Strand 2
B
1540 1542parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il