Analysis of interatomic Contacts of Structural Units in PDB entry:
3PU8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PU8 entry

There are 2 chains in PDB entry 3PU8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 80ASN 444
A
 GLN 83ALA 445
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3PU8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
86 96Right-handed alpha
Helix 2
2
B
100 104Right-handed 310
Helix 3
3
B
109 113Right-handed 310
Helix 4
4
B
114 122Right-handed alpha
Helix 5
5
B
145 154Right-handed alpha
Helix 6
6
B
174 182Right-handed alpha
Helix 7
7
B
200 206Right-handed 310
Helix 8
8
B
209 216Right-handed alpha
Helix 9
9
B
216 222Right-handed alpha
Helix 10
10
B
251 255Right-handed 310
Helix 11
11
B
274 287Right-handed alpha
Helix 12
12
B
289 293Right-handed 310
Helix 13
13
B
294 299Right-handed 310
Helix 14
14
B
338 340Right-handed 310
Helix 15
15
B
341 356Right-handed alpha
Helix 16
16
B
365 388Right-handed alpha
Helix 17
17
B
392 411Right-handed alpha
Helix 18
18
B
414 419Right-handed alpha
Helix 19
19
B
420 422Right-handed 310
Helix 20
20
B
427 444Right-handed alpha
Helix 21
21
A
86 95Right-handed alpha
Helix 22
22
A
100 104Right-handed 310
Helix 23
23
A
109 113Right-handed 310
Helix 24
24
A
114 122Right-handed alpha
Helix 25
25
A
145 154Right-handed alpha
Helix 26
26
A
174 182Right-handed alpha
Helix 27
27
A
200 206Right-handed 310
Helix 28
28
A
209 216Right-handed alpha
Helix 29
29
A
216 222Right-handed alpha
Helix 30
30
A
251 255Right-handed 310
Helix 31
31
A
274 287Right-handed alpha
Helix 32
32
A
289 293Right-handed 310
Helix 33
33
A
294 299Right-handed 310
Helix 34
34
A
341 356Right-handed alpha
Helix 35
35
A
365 388Right-handed alpha
Helix 36
36
A
392 410Right-handed alpha
Helix 37
37
A
414 420Right-handed alpha
Helix 38
38
A
427 443Right-handed alpha
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There are 4 sheets in PDB entry 3PU8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
127 129parallel
Strand 3
B
312 315anti-parallel
Strand 4
B
256 263anti-parallel
Strand 5
B
329 336anti-parallel
Strand 6
B
236 240anti-parallel
Strand 7
B
190 196anti-parallel
Strand 8
B
158 163anti-parallel
Strand 9
B
168 173anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 249first strand
Strand 2
B
320 325anti-parallel
Strand 3
B
265 271anti-parallel
Strand 4
B
303 308anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
127 129parallel
Strand 3
A
312 315anti-parallel
Strand 4
A
256 263anti-parallel
Strand 5
A
329 336anti-parallel
Strand 6
A
236 240anti-parallel
Strand 7
A
190 196anti-parallel
Strand 8
A
158 163anti-parallel
Strand 9
A
168 173anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 249first strand
Strand 2
A
320 325anti-parallel
Strand 3
A
266 271anti-parallel
Strand 4
A
303 307anti-parallel
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