Analysis of interatomic Contacts of Structural Units in PDB entry:
3PVX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PVX entry

There are 4 chains in PDB entry 3PVX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 341
B
 T 373 T 373
B
 A 375 C 386
C
 G 347 C 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 3PVX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 19Right-handed alpha
Helix 2
2
A
20 24Right-handed 310
Helix 3
3
A
47 52Right-handed alpha
Helix 4
4
A
60 68Right-handed alpha
Helix 5
5
A
77 94Right-handed alpha
Helix 6
6
A
117 137Right-handed alpha
Helix 7
7
A
147 158Right-handed alpha
Helix 8
8
A
167 177Right-handed alpha
Helix 9
9
A
179 183Right-handed 310
Helix 10
10
A
187 197Right-handed alpha
Helix 11
11
A
202 207Right-handed 310
Helix 12
12
A
209 218Right-handed alpha
Helix 13
13
A
218 230Right-handed alpha
Helix 14
14
A
257 277Right-handed alpha
Helix 15
15
A
307 325Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3PVX. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
106 110anti-parallel
Strand 3
A
3 8anti-parallel
Strand 4
A
140 145anti-parallel
Strand 5
A
163 165parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 46first strand
Strand 2
A
28 33anti-parallel
Strand 3
A
72 75parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 255first strand
Strand 2
A
330 338anti-parallel
Strand 3
A
283 290anti-parallel
Strand 4
A
295 301anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il